Classification, evolution, and species groups within the Triatominae

CJ Schofield, C Galvão - Acta tropica, 2009‏ - Elsevier
Classification of the Triatominae has become a complex balance between traditional
approaches and a wide variety of evolutionary interpretations. On the one hand is the need …

How good are deep phylogenetic trees?

H Philippe, J Laurent - Current opinion in genetics & development, 1998‏ - Elsevier
Great interest is given to species emerging early in phylogenetic reconstruction because
they are often assumed to represent an ancestor. Recent studies indicate, however, that …

ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference

JL Steenwyk, TJ Buida III, Y Li, XX Shen, A Rokas - PLoS biology, 2020‏ - journals.plos.org
Highly divergent sites in multiple sequence alignments (MSAs), which can stem from
erroneous inference of homology and saturation of substitutions, are thought to negatively …

TreeTime: Maximum-likelihood phylodynamic analysis

P Sagulenko, V Puller, RA Neher - Virus evolution, 2018‏ - academic.oup.com
Mutations that accumulate in the genome of cells or viruses can be used to infer their
evolutionary history. In the case of rapidly evolving organisms, genomes can reveal their …

Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies

NA Doria-Rose, CA Schramm, J Gorman, PL Moore… - Nature, 2014‏ - nature.com
Antibodies capable of neutralizing HIV-1 often target variable regions 1 and 2 (V1V2) of the
HIV-1 envelope, but the mechanism of their elicitation has been unclear. Here we define the …

BEAST: Bayesian evolutionary analysis by sampling trees

AJ Drummond, A Rambaut - BMC evolutionary biology, 2007‏ - Springer
Background The evolutionary analysis of molecular sequence variation is a statistical
enterprise. This is reflected in the increased use of probabilistic models for phylogenetic …

[کتاب][B] Computational molecular evolution

Z Yang - 2006‏ - books.google.com
The field of molecular evolution has experienced explosive growth in recent years due to the
rapid accumulation of genetic sequence data, continuous improvements to computer …

Evolution of lacewings and allied orders using anchored phylogenomics (N europtera, M egaloptera, R aphidioptera)

SL Winterton, AR Lemmon, JP Gillung… - Systematic …, 2018‏ - Wiley Online Library
Abstract Analysis of anchored hybrid enrichment (AHE) data under a variety of analytical
parameters for a broadly representative sample of taxa (136 species representing all extant …

Watermelon origin solved with molecular phylogenetics including L innaean material: another example of museomics

G Chomicki, SS Renner - New Phytologist, 2015‏ - Wiley Online Library
Type specimens are permanently preserved biological specimens that fix the usage of
species names. This method became widespread from 1935 onwards and is now obligatory …

Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins

RP Hirt, JM Logsdon Jr, B Healy, MW Dorey… - Proceedings of the …, 1999‏ - pnas.org
We have determined complete gene sequences encoding the largest subunit of the RNA
polymerase II (RBP1) from two Microsporidia, Vairimorpha necatrix and Nosema locustae …