Bacterial origins of human cell-autonomous innate immune mechanisms

T Wein, R Sorek - Nature Reviews Immunology, 2022 - nature.com
The cell-autonomous innate immune system enables animal cells to resist viral infection.
This system comprises an array of sensors that, after detecting viral molecules, activate the …

Mechanisms and clinical importance of bacteriophage resistance

JE Egido, AR Costa… - FEMS microbiology …, 2022 - academic.oup.com
We are in the midst of a golden age of uncovering defense systems against bacteriophages.
Apart from the fundamental interest in these defense systems, and revolutionary applications …

[HTML][HTML] An expanded arsenal of immune systems that protect bacteria from phages

A Millman, S Melamed, A Leavitt, S Doron… - Cell host & …, 2022 - cell.com
Bacterial anti-phage systems are frequently clustered in microbial genomes, forming
defense islands. This property enabled the recent discovery of multiple defense systems …

Systematic and quantitative view of the antiviral arsenal of prokaryotes

F Tesson, A Hervé, E Mordret, M Touchon… - Nature …, 2022 - nature.com
Bacteria and archaea have developed multiple antiviral mechanisms, and genomic
evidence indicates that several of these antiviral systems co-occur in the same strain. Here …

[HTML][HTML] Phages and their satellites encode hotspots of antiviral systems

F Rousset, F Depardieu, S Miele, J Dowding… - Cell host & …, 2022 - cell.com
Bacteria carry diverse genetic systems to defend against viral infection, some of which are
found within prophages where they inhibit competing viruses. Phage satellites pose …

Phage defence by deaminase-mediated depletion of deoxynucleotides in bacteria

BY Hsueh, GB Severin, CA Elg, EJ Waldron… - Nature …, 2022 - nature.com
Abstract Vibrio cholerae biotype El Tor is perpetuating the longest cholera pandemic in
recorded history. The genomic islands VSP-1 and VSP-2 distinguish El Tor from previous …

PADLOC: a web server for the identification of antiviral defence systems in microbial genomes

LJ Payne, S Meaden, MR Mestre, C Palmer… - Nucleic acids …, 2022 - academic.oup.com
Most bacteria and archaea possess multiple antiviral defence systems that protect against
infection by phages, archaeal viruses and mobile genetic elements. Our understanding of …

The defense island repertoire of the Escherichia coli pan-genome

D Hochhauser, A Millman, R Sorek - PLoS genetics, 2023 - journals.plos.org
It has become clear in recent years that anti-phage defense systems cluster non-randomly
within bacterial genomes in so-called “defense islands”. Despite serving as a valuable tool …

Evolutionary and mechanistic diversity of Type IF CRISPR-associated transposons

SE Klompe, N Jaber, LY Beh, JT Mohabir, A Bernheim… - Molecular cell, 2022 - cell.com
Canonical CRISPR-Cas systems utilize RNA-guided nucleases for targeted cleavage of
foreign nucleic acids, whereas some nuclease-deficient CRISPR-Cas complexes have been …

Cargo Genes of Tn7-Like Transposons Comprise an Enormous Diversity of Defense Systems, Mobile Genetic Elements, and Antibiotic Resistance Genes

S Benler, G Faure, H Altae-Tran, S Shmakov, F Zhang… - MBio, 2021 - Am Soc Microbiol
Transposition is a major mechanism of horizontal gene mobility in prokaryotes. However,
exploration of the genes mobilized by transposons (cargo) is hampered by the difficulty in …