Evolution of the mutation rate

M Lynch - TRENDS in Genetics, 2010 - cell.com
Understanding the mechanisms of evolution requires information on the rate of appearance
of new mutations and their effects at the molecular and phenotypic levels. Although …

The distribution of fitness effects of new mutations

A Eyre-Walker, PD Keightley - Nature Reviews Genetics, 2007 - nature.com
The distribution of fitness effects (DFE) of new mutations is a fundamental entity in genetics
that has implications ranging from the genetic basis of complex disease to the stability of the …

Quantitative evolutionary dynamics using high-resolution lineage tracking

SF Levy, JR Blundell, S Venkataram, DA Petrov… - Nature, 2015 - nature.com
Evolution of large asexual cell populations underlies∼ 30% of deaths worldwide, including
those caused by bacteria, fungi, parasites, and cancer. However, the dynamics underlying …

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

GI Lang, DP Rice, MJ Hickman, E Sodergren… - Nature, 2013 - nature.com
The dynamics of adaptation determine which mutations fix in a population, and hence how
reproducible evolution will be. This is central to understanding the spectra of mutations …

Global epistasis makes adaptation predictable despite sequence-level stochasticity

S Kryazhimskiy, DP Rice, ER Jerison, MM Desai - Science, 2014 - science.org
Epistatic interactions between mutations can make evolutionary trajectories contingent on
the chance occurrence of initial mutations. We used experimental evolution in …

Precise estimates of mutation rate and spectrum in yeast

YO Zhu, ML Siegal, DW Hall… - Proceedings of the …, 2014 - National Acad Sciences
Mutation is the ultimate source of genetic variation. The most direct and unbiased method of
studying spontaneous mutations is via mutation accumulation (MA) lines. Until recently, MA …

Experimental design, population dynamics, and diversity in microbial experimental evolution

B Van den Bergh, T Swings, M Fauvart… - … and Molecular Biology …, 2018 - Am Soc Microbiol
In experimental evolution, laboratory-controlled conditions select for the adaptation of
species, which can be monitored in real time. Despite the current popularity of such …

A genome-wide view of the spectrum of spontaneous mutations in yeast

M Lynch, W Sung, K Morris, N Coffey… - Proceedings of the …, 2008 - National Acad Sciences
The mutation process ultimately defines the genetic features of all populations and, hence,
has a bearing on a wide range of issues involving evolutionary genetics, inheritance, and …

Beneficial mutation–selection balance and the effect of linkage on positive selection

MM Desai, DS Fisher - Genetics, 2007 - academic.oup.com
When beneficial mutations are rare, they accumulate by a series of selective sweeps. But
when they are common, many beneficial mutations will occur before any can fix, so there will …

Spontaneous mutation accumulation studies in evolutionary genetics

DL Halligan, PD Keightley - Annual Review of Ecology …, 2009 - annualreviews.org
Mutation accumulation (MA) experiments, in which mutations are allowed to drift to fixation in
inbred lines, have been a principal way of studying the rates and properties of new …