Roles of mRNA poly (A) tails in regulation of eukaryotic gene expression

LA Passmore, J Coller - Nature Reviews Molecular Cell Biology, 2022 - nature.com
In eukaryotes, poly (A) tails are present on almost every mRNA. Early experiments led to the
hypothesis that poly (A) tails and the cytoplasmic polyadenylate-binding protein (PABPC) …

Synonymous but not silent: the codon usage code for gene expression and protein folding

Y Liu, Q Yang, F Zhao - Annual review of biochemistry, 2021 - annualreviews.org
Codon usage bias, the preference for certain synonymous codons, is found in all genomes.
Although synonymous mutations were previously thought to be silent, a large body of …

The genetic and biochemical determinants of mRNA degradation rates in mammals

V Agarwal, DR Kelley - Genome biology, 2022 - Springer
Background Degradation rate is a fundamental aspect of mRNA metabolism, and the factors
governing it remain poorly characterized. Understanding the genetic and biochemical …

Translation and mRNA stability control

Q Wu, AA Bazzini - Annual review of biochemistry, 2023 - annualreviews.org
Messenger RNA (mRNA) stability and translational efficiency are two crucial aspects of the
post-transcriptional process that profoundly impact protein production in a cell. While it is …

Codon optimality-mediated mRNA degradation: Linking translational elongation to mRNA stability

H Bae, J Coller - Molecular cell, 2022 - cell.com
Messenger RNA (mRNA) translation by the ribosome represents the final step of a
complicated molecular dance from DNA to protein. Although classically considered a …

Theoretical basis for stabilizing messenger RNA through secondary structure design

HK Wayment-Steele, DS Kim, CA Choe… - Nucleic acids …, 2021 - academic.oup.com
RNA hydrolysis presents problems in manufacturing, long-term storage, world-wide delivery
and in vivo stability of messenger RNA (mRNA)-based vaccines and therapeutics. A largely …

Advancements of in vitro transcribed mRNA (IVT mRNA) to enable translation into the clinics

DD Kang, H Li, Y Dong - Advanced Drug Delivery Reviews, 2023 - Elsevier
The accelerated progress and approval of two mRNA-based vaccines to address the SARS-
CoV-2 virus were unprecedented. This record-setting feat was made possible through the …

Synaptic FUS accumulation triggers early misregulation of synaptic RNAs in a mouse model of ALS

S Sahadevan, KM Hembach, E Tantardini… - Nature …, 2021 - nature.com
Mutations disrupting the nuclear localization of the RNA-binding protein FUS characterize a
subset of amyotrophic lateral sclerosis patients (ALS-FUS). FUS regulates nuclear RNAs …

Specific recognition and ubiquitination of translating ribosomes by mammalian CCR4–NOT

E Absmeier, V Chandrasekaran, FJ O'Reilly… - Nature structural & …, 2023 - nature.com
Translation affects messenger RNA stability and, in yeast, this is mediated by the Ccr4–Not
deadenylation complex. The details of this process in mammals remain unclear. Here, we …

Glutamyl-prolyl-tRNA synthetase regulates proline-rich pro-fibrotic protein synthesis during cardiac fibrosis

J Wu, KCV Subbaiah, LH **e, F Jiang, ES Khor… - Circulation …, 2020 - Am Heart Assoc
Rationale: Increased protein synthesis of profibrotic genes is a common feature in cardiac
fibrosis and heart failure. Despite this observation, critical factors and molecular …