Recognition and processing of ubiquitin-protein conjugates by the proteasome

D Finley - Annual review of biochemistry, 2009 - annualreviews.org
The proteasome is an intricate molecular machine, which serves to degrade proteins
following their conjugation to ubiquitin. Substrates dock onto the proteasome at its 19 …

The ubiquitin-proteasome system

D Nandi, P Tahiliani, A Kumar, D Chandu - Journal of biosciences, 2006 - Springer
Abstract The 2004 Nobel Prize in chemistry for the discovery of protein ubiquitination has led
to the recognition of cellular proteolysis as a central area of research in biology. Eukaryotic …

The Ubiquitin–Proteasome System of Saccharomyces cerevisiae

D Finley, HD Ulrich, T Sommer, P Kaiser - Genetics, 2012 - academic.oup.com
Protein modifications provide cells with exquisite temporal and spatial control of protein
function. Ubiquitin is among the most important modifiers, serving both to target hundreds of …

Docking of the proteasomal ATPases' carboxyl termini in the 20S proteasome's α ring opens the gate for substrate entry

DM Smith, SC Chang, S Park, D Finley, Y Cheng… - Molecular cell, 2007 - cell.com
The 20S proteasome functions in protein degradation in eukaryotes together with the 19S
ATPases or in archaea with the homologous PAN ATPase complex. These ATPases contain …

Structure, dynamics and function of the 26S proteasome

Y Mao - Macromolecular protein complexes III: structure and …, 2021 - Springer
The 26S proteasome is the most complex ATP-dependent protease machinery, of~ 2.5 MDa
mass, ubiquitously found in all eukaryotes. It selectively degrades ubiquitin-conjugated …

Minimal mechanistic component of HbYX-dependent proteasome activation that reverses impairment by neurodegenerative-associated oligomers

JJY Chuah, TA Thibaudeau, DM Smith - Communications biology, 2023 - nature.com
The implication of reduced proteasomal function in neurodegenerative diseases combined
with studies showing the protective effects of increasing proteasome activity in animal …

Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases

J Rabl, DM Smith, Y Yu, SC Chang, AL Goldberg… - Molecular cell, 2008 - cell.com
Substrates enter the cylindrical 20S proteasome through a gated channel that is regulated
by the ATPases in the 19S regulatory particle in eukaryotes or the homologous PAN ATPase …

Proteasome activators

BM Stadtmueller, CP Hill - Molecular cell, 2011 - cell.com
Proteasomes degrade a multitude of protein substrates in the cytosol and nucleus, and
thereby are essential for many aspects of cellular function. Because the proteolytic sites are …

Structural biology of the proteasome

E Kish-Trier, CP Hill - Annual review of biophysics, 2013 - annualreviews.org
The proteasome refers to a collection of complexes centered on the 20S proteasome core
particle (20S CP), a complex of 28 subunits that houses proteolytic sites in its hollow interior …

Bringing dynamic molecular machines into focus by methyl-TROSY NMR

R Rosenzweig, LE Kay - Annual review of biochemistry, 2014 - annualreviews.org
Large macromolecular assemblies, so-called molecular machines, are critical to ensuring
proper cellular function. Understanding how proper function is achieved at the atomic level …