Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes

RA Studer, BH Dessailly, CA Orengo - Biochemical journal, 2013 - portlandpress.com
The present review focuses on the evolution of proteins and the impact of amino acid
mutations on function from a structural perspective. Proteins evolve under the law of natural …

Influenza A virus polymerase: structural insights into replication and host adaptation mechanisms

S Boivin, S Cusack, RWH Ruigrok, DJ Hart - Journal of Biological Chemistry, 2010 - ASBMB
The heterotrimeric RNA-dependent RNA polymerase of influenza viruses catalyzes RNA
replication and transcription activities in infected cell nuclei. The nucleotide polymerization …

Adaptation of avian influenza A virus polymerase in mammals to overcome the host species barrier

B Mänz, M Schwemmle, L Brunotte - Journal of virology, 2013 - Am Soc Microbiol
Avian influenza A viruses, such as the highly pathogenic avian H5N1 viruses, sporadically
enter the human population but often do not transmit between individuals. In rare cases …

Stability-activity tradeoffs constrain the adaptive evolution of RubisCO

RA Studer, PA Christin, MA Williams… - Proceedings of the …, 2014 - National Acad Sciences
A well-known case of evolutionary adaptation is that of ribulose-1, 5-bisphosphate
carboxylase (RubisCO), the enzyme responsible for fixation of CO2 during photosynthesis …

Viral determinants of influenza A virus host range

AV Cauldwell, JS Long… - Journal of General …, 2014 - microbiologyresearch.org
Typical avian influenza A viruses are restricted from replicating efficiently and causing
disease in humans. However, an avian virus can become adapted to humans by mutating or …

Identifying genetic markers of adaptation for surveillance of viral host jumps

KM Pepin, S Lass, JRC Pulliam, AF Read… - Nature Reviews …, 2010 - nature.com
Adaptation is often thought to affect the likelihood that a virus will be able to successfully
emerge in a new host species. If so, surveillance for genetic markers of adaptation could …

Reassortment and mutation of the avian influenza virus polymerase PA subunit overcome species barriers

A Mehle, VG Dugan, JK Taubenberger… - Journal of …, 2012 - Am Soc Microbiol
The emergence of new pandemic influenza A viruses requires overcoming barriers to cross-
species transmission as viruses move from animal reservoirs into humans. This complicated …

Evolution of viral genomes: interplay between selection, recombination, and other forces

SJ Spielman, S Weaver, SD Shank, BR Magalis… - … genomics: statistical and …, 2019 - Springer
Natural selection is a fundamental force sha** organismal evolution, as it both maintains
function and enables adaptation and innovation. Viruses, with their typically short and …

Estimating the distribution of selection coefficients from phylogenetic data using sitewise mutation-selection models

AU Tamuri, M dos Reis, RA Goldstein - Genetics, 2012 - academic.oup.com
Estimation of the distribution of selection coefficients of mutations is a long-standing issue in
molecular evolution. In addition to population-based methods, the distribution can be …

Complexin-1 enhances ultrasound neurotransmission in the mammalian auditory pathway

M Liu, C Wang, L Huo, J Cao, X Mao, Z He, C Hu… - Nature Genetics, 2024 - nature.com
Unlike megabats, which rely on well-developed vision, microbats use ultrasonic
echolocation to navigate and locate prey. To study ultrasound perception, here we …