Detection of colinear blocks and synteny and evolutionary analyses based on utilization of MCScanX
As different taxa evolve, gene order often changes slowly enough that chromosomal 'blocks'
with conserved gene orders (synteny) are discernible. The MCScanX toolkit (https://github …
with conserved gene orders (synteny) are discernible. The MCScanX toolkit (https://github …
Reciprocal transplant gardens as gold standard to detect local adaptation in grassland species: New opportunities moving into the 21st century
LC Johnson, MB Galliart, JD Alsdurf… - Journal of …, 2022 - Wiley Online Library
Local adaptation is a fundamental phenomenon in evolutionary biology, with relevance to
formation of ecotypes, and ultimately new species, and application to restoration and …
formation of ecotypes, and ultimately new species, and application to restoration and …
Pangenomic analysis identifies structural variation associated with heat tolerance in pearl millet
Pearl millet is an important cereal crop worldwide and shows superior heat tolerance. Here,
we developed a graph-based pan-genome by assembling ten chromosomal genomes with …
we developed a graph-based pan-genome by assembling ten chromosomal genomes with …
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
The development of multiple chromosome-scale reference genome sequences in many
taxonomic groups has yielded a high-resolution view of the patterns and processes of …
taxonomic groups has yielded a high-resolution view of the patterns and processes of …
The complex polyploid genome architecture of sugarcane
Sugarcane, the world's most harvested crop by tonnage, has shaped global history, trade
and geopolitics, and is currently responsible for 80% of sugar production worldwide. While …
and geopolitics, and is currently responsible for 80% of sugar production worldwide. While …
Dynamic genome evolution in a model fern
The large size and complexity of most fern genomes have hampered efforts to elucidate
fundamental aspects of fern biology and land plant evolution through genome-enabled …
fundamental aspects of fern biology and land plant evolution through genome-enabled …
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
Long-term climate change and periodic environmental extremes threaten food and fuel
security and global crop productivity,–. Although molecular and adaptive breeding strategies …
security and global crop productivity,–. Although molecular and adaptive breeding strategies …
Green plant genomes: What we know in an era of rapidly expanding opportunities
Green plants play a fundamental role in ecosystems, human health, and agriculture. As de
novo genomes are being generated for all known eukaryotic species as advocated by the …
novo genomes are being generated for all known eukaryotic species as advocated by the …
Genomic variation in weedy and cultivated broomcorn millet accessions uncovers the genetic architecture of agronomic traits
Q Lu, H Zhao, Z Zhang, Y Bai, H Zhao, G Liu, M Liu… - Nature Genetics, 2024 - nature.com
Large-scale genomic variations are fundamental resources for crop genetics and breeding.
Here we sequenced 1,904 genomes of broomcorn millet to an average of 40× sequencing …
Here we sequenced 1,904 genomes of broomcorn millet to an average of 40× sequencing …
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci
Wild and weedy relatives of domesticated crops harbor genetic variants that can advance
agricultural biotechnology. Here we provide a genome resource for the wild plant green …
agricultural biotechnology. Here we provide a genome resource for the wild plant green …