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Network medicine in the age of biomedical big data
Network medicine is an emerging area of research dealing with molecular and genetic
interactions, network biomarkers of disease, and therapeutic target discovery. Large-scale …
interactions, network biomarkers of disease, and therapeutic target discovery. Large-scale …
Decoding disease: from genomes to networks to phenotypes
AK Wong, RSG Sealfon, CL Theesfeld… - Nature Reviews …, 2021 - nature.com
Interpreting the effects of genetic variants is key to understanding individual susceptibility to
disease and designing personalized therapeutic approaches. Modern experimental …
disease and designing personalized therapeutic approaches. Modern experimental …
Gene co-expression analysis for functional classification and gene–disease predictions
Gene co-expression networks can be used to associate genes of unknown function with
biological processes, to prioritize candidate disease genes or to discern transcriptional …
biological processes, to prioritize candidate disease genes or to discern transcriptional …
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
VA Schneider, T Graves-Lindsay, K Howe… - Genome …, 2017 - genome.cshlp.org
The human reference genome assembly plays a central role in nearly all aspects of today's
basic and clinical research. GRCh38 is the first coordinate-changing assembly update since …
basic and clinical research. GRCh38 is the first coordinate-changing assembly update since …
A novel approach to high-quality postmortem tissue procurement: the GTEx project
LJ Carithers, K Ardlie, M Barcus… - Biopreservation and …, 2015 - liebertpub.com
The Genotype-Tissue Expression (GTEx) project, sponsored by the NIH Common Fund, was
established to study the correlation between human genetic variation and tissue-specific …
established to study the correlation between human genetic variation and tissue-specific …
Transfer learning for high-dimensional linear regression: Prediction, estimation and minimax optimality
This paper considers estimation and prediction of a high-dimensional linear regression in
the setting of transfer learning where, in addition to observations from the target model …
the setting of transfer learning where, in addition to observations from the target model …
Understanding tissue-specific gene regulation
Although all human tissues carry out common processes, tissues are distinguished by gene
expression patterns, implying that distinct regulatory programs control tissue specificity. In …
expression patterns, implying that distinct regulatory programs control tissue specificity. In …
Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets
Cell type-specific gene expression patterns are outputs of transcriptional gene regulatory
networks (GRNs) that connect transcription factors and signaling proteins to target genes …
networks (GRNs) that connect transcription factors and signaling proteins to target genes …
Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases
Map** perturbed molecular circuits that underlie complex diseases remains a great
challenge. We developed a comprehensive resource of 394 cell type–and tissue-specific …
challenge. We developed a comprehensive resource of 394 cell type–and tissue-specific …
Mechanisms of tissue and cell-type specificity in heritable traits and diseases
Hundreds of heritable traits and diseases that are caused by germline aberrations in
ubiquitously expressed genes manifest in a remarkably limited number of cell types and …
ubiquitously expressed genes manifest in a remarkably limited number of cell types and …