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Electromicrobiology: the ecophysiology of phylogenetically diverse electroactive microorganisms
Electroactive microorganisms markedly affect many environments in which they establish
outer-surface electrical contacts with other cells and minerals or reduce soluble extracellular …
outer-surface electrical contacts with other cells and minerals or reduce soluble extracellular …
Diversity, ecology and evolution of Archaea
Compared to bacteria, our knowledge of archaeal biology is limited. Historically,
microbiologists have mostly relied on culturing and single-gene diversity surveys to …
microbiologists have mostly relied on culturing and single-gene diversity surveys to …
A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche
Fusobacterium nucleatum (Fn), a bacterium present in the human oral cavity and rarely
found in the lower gastrointestinal tract of healthy individuals, is enriched in human …
found in the lower gastrointestinal tract of healthy individuals, is enriched in human …
BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes
Methods for evaluating the quality of genomic and metagenomic data are essential to aid
genome assembly procedures and to correctly interpret the results of subsequent analyses …
genome assembly procedures and to correctly interpret the results of subsequent analyses …
Significantly improving the quality of genome assemblies through curation
Genome sequence assemblies provide the basis for our understanding of biology.
Generating error-free assemblies is therefore the ultimate, but sadly still unachieved goal of …
Generating error-free assemblies is therefore the ultimate, but sadly still unachieved goal of …
Community-led, integrated, reproducible multi-omics with anvi'o
Big data abound in microbiology, but the workflows designed to enable researchers to
interpret data can constrain the biological questions that can be asked. Five years after …
interpret data can constrain the biological questions that can be asked. Five years after …
BlobToolKit–interactive quality assessment of genome assemblies
Reconstruction of target genomes from sequence data produced by instruments that are
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …
[HTML][HTML] Biosynthetic potential of the global ocean microbiome
Natural microbial communities are phylogenetically and metabolically diverse. In addition to
underexplored organismal groups, this diversity encompasses a rich discovery potential for …
underexplored organismal groups, this diversity encompasses a rich discovery potential for …
inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains
Coexisting microbial cells of the same species often exhibit genetic variation that can affect
phenotypes ranging from nutrient preference to pathogenicity. Here we present inStrain, a …
phenotypes ranging from nutrient preference to pathogenicity. Here we present inStrain, a …
[HTML][HTML] Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
The body-wide human microbiome plays a role in health, but its full diversity remains
uncharacterized, particularly outside of the gut and in international populations. We …
uncharacterized, particularly outside of the gut and in international populations. We …