Machine learning and feature selection for drug response prediction in precision oncology applications

M Ali, T Aittokallio - Biophysical reviews, 2019 - Springer
In-depth modeling of the complex interplay among multiple omics data measured from
cancer cell lines or patient tumors is providing new opportunities toward identification of …

Towards the interpretability of machine learning predictions for medical applications targeting personalised therapies: a cancer case survey

AJ Banegas-Luna, J Peña-García, A Iftene… - International Journal of …, 2021 - mdpi.com
Artificial Intelligence is providing astonishing results, with medicine being one of its favourite
playgrounds. Machine Learning and, in particular, Deep Neural Networks are behind this …

Dr. VAE: improving drug response prediction via modeling of drug perturbation effects

L Rampášek, D Hidru, P Smirnov, B Haibe-Kains… - …, 2019 - academic.oup.com
Motivation Individualized drug response prediction is a fundamental part of personalized
medicine for cancer. Great effort has been made to discover biomarkers or to develop …

Predicting synergism of cancer drug combinations using NCI-ALMANAC data

P Sidorov, S Naulaerts, J Ariey-Bonnet… - Frontiers in …, 2019 - frontiersin.org
Drug combinations are of great interest for cancer treatment. Unfortunately, the discovery of
synergistic combinations by purely experimental means is only feasible on small sets of …

MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery

DJ Wooten, CT Meyer, ALR Lubbock… - Nature …, 2021 - nature.com
Drug combination discovery depends on reliable synergy metrics but no consensus exists
on the correct synergy criterion to characterize combined interactions. The fragmented state …

[HTML][HTML] Deep graph embedding for prioritizing synergistic anticancer drug combinations

P Jiang, S Huang, Z Fu, Z Sun, TM Lakowski… - Computational and …, 2020 - Elsevier
Drug combinations are frequently used for the treatment of cancer patients in order to
increase efficacy, decrease adverse side effects, or overcome drug resistance. Given the …

A cancer drug atlas enables synergistic targeting of independent drug vulnerabilities

RS Narayan, P Molenaar, J Teng… - Nature …, 2020 - nature.com
Personalized cancer treatments using combinations of drugs with a synergistic effect is
attractive but proves to be highly challenging. Here we present an approach to uncover the …

Network propagation predicts drug synergy in cancers

H Li, T Li, D Quang, Y Guan - Cancer research, 2018 - aacrjournals.org
Combination therapies are commonly used to treat patients with complex diseases that
respond poorly to single-agent therapies. In vitro high-throughput drug screening is a …

The missing pieces of artificial intelligence in medicine

C Gilvary, N Madhukar, J Elkhader… - Trends in pharmacological …, 2019 - cell.com
Stakeholders across the entire healthcare chain are looking to incorporate artificial
intelligence (AI) into their decision-making process. From early-stage drug discovery to …

Unlocking the therapeutic potential of drug combinations through synergy prediction using graph transformer networks

W Alam, H Tayara, KT Chong - Computers in Biology and Medicine, 2024 - Elsevier
Drug combinations are frequently used to treat cancer to reduce side effects and increase
efficacy. The experimental discovery of drug combination synergy is time-consuming and …