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Machine learning and feature selection for drug response prediction in precision oncology applications
M Ali, T Aittokallio - Biophysical reviews, 2019 - Springer
In-depth modeling of the complex interplay among multiple omics data measured from
cancer cell lines or patient tumors is providing new opportunities toward identification of …
cancer cell lines or patient tumors is providing new opportunities toward identification of …
Towards the interpretability of machine learning predictions for medical applications targeting personalised therapies: a cancer case survey
Artificial Intelligence is providing astonishing results, with medicine being one of its favourite
playgrounds. Machine Learning and, in particular, Deep Neural Networks are behind this …
playgrounds. Machine Learning and, in particular, Deep Neural Networks are behind this …
Dr. VAE: improving drug response prediction via modeling of drug perturbation effects
Motivation Individualized drug response prediction is a fundamental part of personalized
medicine for cancer. Great effort has been made to discover biomarkers or to develop …
medicine for cancer. Great effort has been made to discover biomarkers or to develop …
Predicting synergism of cancer drug combinations using NCI-ALMANAC data
Drug combinations are of great interest for cancer treatment. Unfortunately, the discovery of
synergistic combinations by purely experimental means is only feasible on small sets of …
synergistic combinations by purely experimental means is only feasible on small sets of …
MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery
Drug combination discovery depends on reliable synergy metrics but no consensus exists
on the correct synergy criterion to characterize combined interactions. The fragmented state …
on the correct synergy criterion to characterize combined interactions. The fragmented state …
[HTML][HTML] Deep graph embedding for prioritizing synergistic anticancer drug combinations
Drug combinations are frequently used for the treatment of cancer patients in order to
increase efficacy, decrease adverse side effects, or overcome drug resistance. Given the …
increase efficacy, decrease adverse side effects, or overcome drug resistance. Given the …
A cancer drug atlas enables synergistic targeting of independent drug vulnerabilities
RS Narayan, P Molenaar, J Teng… - Nature …, 2020 - nature.com
Personalized cancer treatments using combinations of drugs with a synergistic effect is
attractive but proves to be highly challenging. Here we present an approach to uncover the …
attractive but proves to be highly challenging. Here we present an approach to uncover the …
Network propagation predicts drug synergy in cancers
Combination therapies are commonly used to treat patients with complex diseases that
respond poorly to single-agent therapies. In vitro high-throughput drug screening is a …
respond poorly to single-agent therapies. In vitro high-throughput drug screening is a …
The missing pieces of artificial intelligence in medicine
Stakeholders across the entire healthcare chain are looking to incorporate artificial
intelligence (AI) into their decision-making process. From early-stage drug discovery to …
intelligence (AI) into their decision-making process. From early-stage drug discovery to …
Unlocking the therapeutic potential of drug combinations through synergy prediction using graph transformer networks
Drug combinations are frequently used to treat cancer to reduce side effects and increase
efficacy. The experimental discovery of drug combination synergy is time-consuming and …
efficacy. The experimental discovery of drug combination synergy is time-consuming and …