Network‐based prediction of protein function

R Sharan, I Ulitsky, R Shamir - Molecular systems biology, 2007 - embopress.org
Functional annotation of proteins is a fundamental problem in the post‐genomic era. The
recent availability of protein interaction networks for many model species has spurred on the …

Histone deacetylases—an important class of cellular regulators with a variety of functions

C Hildmann, D Riester, A Schwienhorst - Applied microbiology and …, 2007 - Springer
The elucidation of mechanisms of chromatin remodeling, particular transcriptional activation,
and repression by histone acetylation and deacetylation has shed light on the role of histone …

Network‐based global inference of human disease genes

X Wu, R Jiang, MQ Zhang, S Li - Molecular systems biology, 2008 - embopress.org
Deciphering the genetic basis of human diseases is an important goal of biomedical
research. On the basis of the assumption that phenotypically similar diseases are caused by …

Hepatitis C virus infection protein network

B De Chassey, V Navratil, L Tafforeau… - Molecular systems …, 2008 - embopress.org
A proteome‐wide map** of interactions between hepatitis C virus (HCV) and human
proteins was performed to provide a comprehensive view of the cellular infection. A total of …

Protein localization as a principal feature of the etiology and comorbidity of genetic diseases

S Park, JS Yang, YE Shin, J Park, SK Jang… - Molecular systems …, 2011 - embopress.org
Proteins targeting the same subcellular localization tend to participate in mutual protein–
protein interactions (PPIs) and are often functionally associated. Here, we investigated the …

A network-based approach to prioritize results from genome-wide association studies

N Akula, A Baranova, D Seto, J Solka, MA Nalls… - PloS one, 2011 - journals.plos.org
Genome-wide association studies (GWAS) are a valuable approach to understanding the
genetic basis of complex traits. One of the challenges of GWAS is the translation of genetic …

Integration of biological networks and pathways with genetic association studies

YV Sun - Human genetics, 2012 - Springer
Millions of genetic variants have been assessed for their effects on the trait of interest in
genome-wide association studies (GWAS). The complex traits are affected by a set of inter …

The implications of relationships between human diseases and metabolic subpathways

X Li, C Li, D Shang, J Li, J Han, Y Miao, Y Wang… - PloS one, 2011 - journals.plos.org
One of the challenging problems in the etiology of diseases is to explore the relationships
between initiation and progression of diseases and abnormalities in local regions of …

Network medicine: linking disorders

RM Piro - Human genetics, 2012 - Springer
The molecular events underlying many human hereditary disorders remain to be discovered
despite the significant advances made in molecular biology and genetics in the past years …

Identification of a molecular recognition feature in the E1A oncoprotein that binds the SUMO conjugase UBC9 and likely interferes with polySUMOylation

AF Yousef, GJ Fonseca, P Pelka, JNG Ablack, C Walsh… - Oncogene, 2010 - nature.com
Hub proteins have central roles in regulating cellular processes. By targeting a single
cellular hub, a viral oncogene may gain control over an entire module in the cellular …