Genome-wide genetic marker discovery and genoty** using next-generation sequencing

JW Davey, PA Hohenlohe, PD Etter, JQ Boone… - Nature Reviews …, 2011 - nature.com
The advent of next-generation sequencing (NGS) has revolutionized genomic and
transcriptomic approaches to biology. These new sequencing tools are also valuable for the …

Challenges in analysis and interpretation of microsatellite data for population genetic studies

AI Putman, I Carbone - Ecology and evolution, 2014 - Wiley Online Library
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …

Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

MC Fischer, C Rellstab, M Leuzinger, M Roumet… - BMC genomics, 2017 - Springer
Background Microsatellite markers are widely used for estimating genetic diversity within
and differentiation among populations. However, it has rarely been tested whether such …

Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation

SP Flanagan, BR Forester, EK Latch… - Evolutionary …, 2018 - Wiley Online Library
Identifying and monitoring locally adaptive genetic variation can have direct utility for
conserving species at risk, especially when management may include actions such as …

Species delimitation using genome-wide SNP data

AD Leaché, MK Fujita, VN Minin… - Systematic …, 2014 - academic.oup.com
The multispecies coalescent has provided important progress for evolutionary inferences,
including increasing the statistical rigor and objectivity of comparisons among competing …

QSTFST comparisons: evolutionary and ecological insights from genomic heterogeneity

T Leinonen, RJS McCairns, RB O'hara… - Nature Reviews …, 2013 - nature.com
Comparative studies of the divergence of quantitative traits and neutral molecular markers,
known as Q ST–F ST comparisons, provide a means for researchers to distinguish between …

Special features of RAD Sequencing data: implications for genoty**

JW Davey, T Cezard, P Fuentes‐Utrilla… - Molecular …, 2013 - Wiley Online Library
Restriction site‐associated DNA Sequencing (RAD‐Seq) is an economical and efficient
method for SNP discovery and genoty**. As with other sequencing‐by‐synthesis …

Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species

AG Nazareno, JB Bemmels, CW Dick… - Molecular ecology …, 2017 - Wiley Online Library
High‐throughput DNA sequencing facilitates the analysis of large portions of the genome in
nonmodel organisms, ensuring high accuracy of population genetic parameters. However …

Single-nucleotide polymorphism (SNP) discovery and applications of SNP genoty** in nonmodel organisms.

JE Seeb, G Carvalho, L Hauser… - Molecular ecology …, 2011 - search.ebscohost.com
An introduction to articles published within the issue is presented, including an approach to
discover single-nucleotide polymorphisms (SNP) for population genetics study of the ringed …

[HTML][HTML] Genomics in marine monitoring: new opportunities for assessing marine health status

SJ Bourlat, A Borja, J Gilbert, MI Taylor, N Davies… - Marine pollution …, 2013 - Elsevier
This viewpoint paper explores the potential of genomics technology to provide accurate,
rapid, and cost efficient observations of the marine environment. The use of such …