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Repetitive DNA sequence detection and its role in the human genome
Repetitive DNA sequences playing critical roles in driving evolution, inducing variation, and
regulating gene expression. In this review, we summarized the definition, arrangement, and …
regulating gene expression. In this review, we summarized the definition, arrangement, and …
A field guide to eukaryotic transposable elements
JN Wells, C Feschotte - Annual review of genetics, 2020 - annualreviews.org
Transposable elements (TEs) are mobile DNA sequences that propagate within genomes.
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …
Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly
Until recently, achieving a reference‐quality genome sequence for bread wheat was long
thought beyond the limits of genome sequencing and assembly technology, primarily due to …
thought beyond the limits of genome sequencing and assembly technology, primarily due to …
From telomere to telomere: The transcriptional and epigenetic state of human repeat elements
SJ Hoyt, JM Storer, GA Hartley, PGS Grady… - Science, 2022 - science.org
Mobile elements and repetitive genomic regions are sources of lineage-specific genomic
innovation and uniquely fingerprint individual genomes. Comprehensive analyses of such …
innovation and uniquely fingerprint individual genomes. Comprehensive analyses of such …
[HTML][HTML] Pan-genome of wild and cultivated soybeans
Y Liu, H Du, P Li, Y Shen, H Peng, S Liu, GA Zhou… - Cell, 2020 - cell.com
Soybean is one of the most important vegetable oil and protein feed crops. To capture the
entire genomic diversity, it is needed to construct a complete high-quality pan-genome from …
entire genomic diversity, it is needed to construct a complete high-quality pan-genome from …
Long-read sequence assembly: a technical evaluation in barley
Sequence assembly of large and repeat-rich plant genomes has been challenging,
requiring substantial computational resources and often several complementary sequence …
requiring substantial computational resources and often several complementary sequence …
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
Background Sequencing technology and assembly algorithms have matured to the point
that high-quality de novo assembly is possible for large, repetitive genomes. Current …
that high-quality de novo assembly is possible for large, repetitive genomes. Current …
RepeatModeler2 for automated genomic discovery of transposable element families
The accelerating pace of genome sequencing throughout the tree of life is driving the need
for improved unsupervised annotation of genome components such as transposable …
for improved unsupervised annotation of genome components such as transposable …
TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
RG Zhang, GY Li, XL Wang, J Dainat… - Horticulture …, 2022 - academic.oup.com
Dear Editor, Transposable elements (TEs) constitute the largest portion of repetitive
sequences in many eukaryotic genomes, with long terminal repeat retrotransposons (LTR …
sequences in many eukaryotic genomes, with long terminal repeat retrotransposons (LTR …
Transposable elements as essential elements in the control of gene expression
A Gebrie - Mobile DNA, 2023 - Springer
Interspersed repetitions called transposable elements (TEs), commonly referred to as mobile
elements, make up a significant portion of the genomes of higher animals. TEs contribute in …
elements, make up a significant portion of the genomes of higher animals. TEs contribute in …