Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility

MM Shea, J Kuppermann, MP Rogers, DS Smith… - PeerJ, 2023 - peerj.com
The emerging field of environmental DNA (eDNA) research lacks universal guidelines for
ensuring data produced are FAIR–findable, accessible, interoperable, and reusable–despite …

A review of the International Seabed Authority database DeepData from a biological perspective: challenges and opportunities in the UN Ocean Decade

M Rabone, T Horton, DOB Jones, E Simon-Lledó… - Database, 2023 - academic.oup.com
There is an urgent need for high-quality biodiversity data in the context of rapid
environmental change. Nowhere is this need more urgent than in the deep ocean, with the …

Seasonal patterns of microbial diversity across the world oceans

EJ Raes, S Myles, L MacNeil, M Wietz… - Limnology and …, 2024 - Wiley Online Library
Understanding the patterns of marine microbial diversity (Bacteria+ Archaea) is essential, as
variations in their alpha‐and beta‐diversities can affect ecological processes. Investigations …

metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data

H Zafeiropoulos, M Beracochea, S Ninidakis… - …, 2023 - academic.oup.com
Abstract Background Genomic Observatories (GOs) are sites of long-term scientific study
that undertake regular assessments of the genomic biodiversity. The European Marine …

Capturing marine microbiomes and environmental DNA: A field sampling guide

NV Patin, KD Goodwin - Frontiers in microbiology, 2023 - frontiersin.org
The expanding interest in marine microbiome and eDNA sequence data has led to a
demand for sample collection and preservation standard practices to enable comparative …

Application of omics tools in designing and monitoring marine protected areas for a sustainable blue economy

NW Jeffery, SJ Lehnert, T Kess, KKS Layton… - Frontiers in …, 2022 - frontiersin.org
A key component of the global blue economy strategy is the sustainable extraction of marine
resources and conservation of marine environments through networks of marine protected …

Surveillance and mitigation of soil pollution through metagenomic approaches

VT Anju, S Busi, MS Mohan, SA Salim, S Ar… - Biotechnology and …, 2024 - Taylor & Francis
Soil pollution is one of the serious global threats causing risk to environment and humans.
The major cause of accumulation of pollutants in soil are anthropogenic activities and some …

Concepts towards functional eukaryotic microbial biogeography in the ocean

C Hoerstmann, S Wohlrab, U John - Journal of Marine Science and …, 2022 - mdpi.com
High-throughput sequencing technologies have revolutionized microbial diversity studies,
shedding light on the oceans' plankton evolution, distribution, and biological activity …

Catalyzing progress in the blue economy through joint marine microbiome research across the Atlantic

AC Ortmann, KD Goodwin, H Bolhuis… - Frontiers in Marine …, 2023 - frontiersin.org
International agreements recognize the importance of cooperative scientific research to
conserve and promote sustainable development of a shared Atlantic Ocean. In 2022, the All …

12S gene metabarcoding with DNA standard quantifies marine bony fish environmental DNA, identifies threshold for reproducible detection, and overcomes distortion …

MY Stoeckle, JH Ausubel, M Coogan - Environmental DNA, 2024 - Wiley Online Library
Single‐species PCR assays accurately measure eDNA concentration. Here we test whether
multi‐species PCR, that is, metabarcoding, with an internal standard can quantify eDNA of …