[HTML][HTML] Challenges for biophysical modeling of microstructure

IO Jelescu, M Palombo, F Bagnato… - Journal of Neuroscience …, 2020 - Elsevier
The biophysical modeling efforts in diffusion MRI have grown considerably over the past 25
years. In this review, we dwell on the various challenges along the journey of bringing a …

Combined diffusion‐relaxometry microstructure imaging: Current status and future prospects

PJ Slator, M Palombo, KL Miller… - Magnetic resonance …, 2021 - Wiley Online Library
Microstructure imaging seeks to noninvasively measure and map microscopic tissue
features by pairing mathematical modeling with tailored MRI protocols. This article reviews …

Diffusion mri with machine learning

D Karimi, SK Warfield - Imaging Neuroscience, 2024 - direct.mit.edu
Diffusion-weighted magnetic resonance imaging (dMRI) of the brain offers unique
capabilities including noninvasive probing of tissue microstructure and structural …

Robust monte-carlo simulations in diffusion-MRI: effect of the substrate complexity and parameter choice on the reproducibility of results

J Rafael-Patino, D Romascano… - Frontiers in …, 2020 - frontiersin.org
Monte-Carlo Diffusion Simulations (MCDS) have been used extensively as a ground truth
tool for the validation of microstructure models for Diffusion-Weighted MRI. However …

[HTML][HTML] MEDUSA: A GPU-based tool to create realistic phantoms of the brain microstructure using tiny spheres

K Ginsburger, F Matuschke, F Poupon, JF Mangin… - NeuroImage, 2019 - Elsevier
A GPU-based tool to generate realistic phantoms of the brain microstructure is presented.
Using a spherical meshing technique which decomposes each microstructural item into a …

[HTML][HTML] ConFiG: Contextual Fibre Growth to generate realistic axonal packing for diffusion MRI simulation

R Callaghan, DC Alexander, M Palombo, H Zhang - Neuroimage, 2020 - Elsevier
Abstract This paper presents Contextual Fibre Growth (ConFiG), an approach to generate
white matter numerical phantoms by mimicking natural fibre genesis. ConFiG grows fibres …

Fast multi-compartment Microstructure Fingerprinting in brain white matter

Q Dessain, C Fuchs, B Macq… - Frontiers in Neuroscience, 2024 - frontiersin.org
We proposed two deep neural network based methods to accelerate the estimation of
microstructural features of crossing fascicles in the white matter. Both methods focus on the …

Metabolic activity diffusion imaging (MADI): I. Metabolic, cytometric modeling and simulations

CS Springer Jr, EM Baker, X Li, B Moloney… - NMR in …, 2023 - Wiley Online Library
Evidence mounts that the steady‐state cellular water efflux (unidirectional) first‐order rate
constant (kio [s− 1]) magnitude reflects the ongoing, cellular metabolic rate of the cytolemmal …

A simulation-driven supervised learning framework to estimate brain microstructure using diffusion MRI

C Fang, Z Yang, D Wassermann, JR Li - Medical Image Analysis, 2023 - Elsevier
We propose a framework to train supervised learning models on synthetic data to estimate
brain microstructure parameters using diffusion magnetic resonance imaging (dMRI) …

Myelin plasticity during early literacy training in at-risk pre-readers

M Economou, FV Bempt, S Van Herck, J Wouters… - Cortex, 2023 - Elsevier
A growing body of neuroimaging evidence shows that white matter can change as a result of
experience and structured learning. Although the majority of previous work has used …