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The art and science of molecular docking
Molecular docking has become an essential part of a structural biologist's and medicinal
chemist's toolkits. Given a chemical compound and the three-dimensional structure of a …
chemist's toolkits. Given a chemical compound and the three-dimensional structure of a …
[HTML][HTML] Molecular modeling in drug discovery
With the financial requirements and high time associated with bringing a commercial drug to
the market, the application of computer-aided drug design has been recognized as a …
the market, the application of computer-aided drug design has been recognized as a …
Screening of potential inhibitors targeting the main protease structure of SARS-CoV-2 via molecular docking, and approach with molecular dynamics, RMSD, RMSF, H …
AM da Fonseca, BJ Caluaco, JMC Madureira… - Molecular …, 2024 - Springer
Abstract Severe Acute Respiratory Syndrome caused by a coronavirus is a recent viral
infection. There is no scientific evidence or clinical trials to indicate that possible therapies …
infection. There is no scientific evidence or clinical trials to indicate that possible therapies …
Advancements in docking and molecular dynamics simulations towards ligand-receptor interactions and structure-function relationships
Protein-ligand interaction is an imperative subject in structure-based drug design and
protein function prediction process. Molecular docking is a computational method which …
protein function prediction process. Molecular docking is a computational method which …
[HTML][HTML] Applications of molecular dynamics simulation in protein study
Molecular Dynamics (MD) Simulations is increasingly used as a powerful tool to study
protein structure-related questions. Starting from the early simulation study on the …
protein structure-related questions. Starting from the early simulation study on the …
Multifaceted computational modeling in glycoscience
Glycoscience assembles all the scientific disciplines involved in studying various molecules
and macromolecules containing carbohydrates and complex glycans. Such an ensemble …
and macromolecules containing carbohydrates and complex glycans. Such an ensemble …
Enhancing biocatalyst performance through immobilization of lipase (Eversa® Transform 2.0) on hybrid amine-epoxy core-shell magnetic nanoparticles
Magnetic nanoparticles were functionalized with polyethylenimine (PEI) and activated with
epoxy. This support was used to immobilize Lipase (Eversa® Transform 2.0)(EVS) …
epoxy. This support was used to immobilize Lipase (Eversa® Transform 2.0)(EVS) …
[HTML][HTML] The rise of molecular simulations in fragment-based drug design (FBDD): an overview
Highlights•Fragment-based drug design (FBDD) is revolutionizing the identification and
optimization of new drug candidates.•Molecular simulations-based approaches are …
optimization of new drug candidates.•Molecular simulations-based approaches are …
Computational approaches in drug designing
A Tiwari, S Singh - Bioinformatics, 2022 - Elsevier
Computational approaches are very necessary and useful resources in the process of drug
development. The goal of drug development is to identify a chemical compound that can fit …
development. The goal of drug development is to identify a chemical compound that can fit …
Identification of cryptic binding sites using MixMD with standard and accelerated molecular dynamics
Protein dynamics play an important role in small molecule binding and can pose a
significant challenge in the identification of potential binding sites. Cryptic binding sites have …
significant challenge in the identification of potential binding sites. Cryptic binding sites have …