Non-coding driver mutations in human cancer

K Elliott, E Larsson - Nature Reviews Cancer, 2021 - nature.com
Tumour formation involves random mutagenic events and positive evolutionary selection
acting on a subset of such events, referred to as driver mutations. A decade of careful …

Oncogenic enhancers in leukemia

R Mulet-Lazaro, R Delwel - Blood Cancer Discovery, 2024 - aacrjournals.org
Although the study of leukemogenesis has traditionally focused on protein-coding genes,
the role of enhancer dysregulation is becoming increasingly recognized. The advent of high …

Silencing of LINE-1 retrotransposons is a selective dependency of myeloid leukemia

Z Gu, Y Liu, Y Zhang, H Cao, J Lyu, X Wang, A Wylie… - Nature …, 2021 - nature.com
Transposable elements or transposons are major players in genetic variability and genome
evolution. Aberrant activation of long interspersed element-1 (LINE-1 or L1) …

A glutamine metabolic switch supports erythropoiesis

J Lyu, Z Gu, Y Zhang, HS Vu, C Lechauve, F Cai… - Science, 2024 - science.org
Metabolic requirements vary during development, and our understanding of how metabolic
activity influences cell specialization is incomplete. Here, we describe a switch from …

Convergent epigenetic evolution drives relapse in acute myeloid leukemia

K Nuno, A Azizi, T Köhnke, C Lareau, A Ediriwickrema… - Elife, 2024 - elifesciences.org
Relapse of acute myeloid leukemia (AML) is highly aggressive and often treatment
refractory. We analyzed previously published AML relapse cohorts and found that 40% of …

Landscape of enhancer disruption and functional screen in melanoma cells

Z Wang, M Luo, Q Liang, K Zhao, Y Hu, W Wang… - Genome Biology, 2023 - Springer
Background The high mutation rate throughout the entire melanoma genome presents a
major challenge in stratifying true driver events from the background mutations. Numerous …

Pan-cancer assessment of mutational landscape in intrinsically disordered hotspots reveals potential driver genes

H Zou, T Pan, Y Gao, R Chen, S Li, J Guo… - Nucleic acids …, 2022 - academic.oup.com
Large-scale cancer genome sequencing has enabled the catalogs of somatic mutations;
however, the mutational impact on intrinsically disordered protein regions (IDRs) has not …

Comprehensive characterization of somatic variants associated with intronic polyadenylation in human cancers

Z Zhao, Q Xu, R Wei, L Huang, W Wang… - Nucleic acids …, 2021 - academic.oup.com
Somatic single nucleotide variants (SNVs) in cancer genome affect gene expression through
various mechanisms depending on their genomic location. While somatic SNVs near …

Disabling uncompetitive inhibition of oncogenic IDH mutations drives acquired resistance

J Lyu, Y Liu, L Gong, M Chen, YF Madanat… - Cancer …, 2023 - aacrjournals.org
Mutations in IDH genes occur frequently in acute myeloid leukemia (AML) and other human
cancers to generate the oncometabolite R-2HG. Allosteric inhibition of mutant IDH …

A primary hierarchically organized patient-derived model enables in depth interrogation of stemness driven by the coding and non-coding genome

H Boutzen, SA Madani Tonekaboni, M Chan-Seng-Yue… - Leukemia, 2022 - nature.com
Many cancers are organized as cellular hierarchies sustained by cancer stem cells (CSC),
whose eradication is crucial for achieving long-term remission. Difficulties to isolate and …