A primer to directed evolution: current methodologies and future directions

LS Vidal, M Isalan, JT Heap… - RSC Chemical Biology, 2023 - pubs.rsc.org
Directed evolution is one of the most powerful tools for protein engineering and functions by
harnessing natural evolution, but on a shorter timescale. It enables the rapid selection of …

Thermal stability enhancement: Fundamental concepts of protein engineering strategies to manipulate the flexible structure

M Rahban, S Zolghadri, N Salehi, F Ahmad… - International journal of …, 2022 - Elsevier
Increasing the temperature by just a few degrees may lead to structural perturbation or
unfolding of the protein and consequent loss of function. The concepts of flexibility and …

Expanding functional protein sequence spaces using generative adversarial networks

D Repecka, V Jauniskis, L Karpus… - Nature Machine …, 2021 - nature.com
De novo protein design for catalysis of any desired chemical reaction is a long-standing goal
in protein engineering because of the broad spectrum of technological, scientific and …

Emergence of a catalytic tetrad during evolution of a highly active artificial aldolase

R Obexer, A Godina, X Garrabou, PRE Mittl, D Baker… - Nature …, 2017 - nature.com
Designing catalysts that achieve the rates and selectivities of natural enzymes is a long-
standing goal in protein chemistry. Here, we show that an ultrahigh-throughput droplet …

Exploring protein fitness landscapes by directed evolution

PA Romero, FH Arnold - Nature reviews Molecular cell biology, 2009 - nature.com
Directed evolution circumvents our profound ignorance of how a protein's sequence
encodes its function by using iterative rounds of random mutation and artificial selection to …

Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …

Nucleic acid-guided nucleases

RT Gill, A Garst, TEW Lipscomb - US Patent 9,982,279, 2018 - Google Patents
2017-08-22 Assigned to MUSE BIOTECHNOLOGY, INC. reassignment MUSE
BIOTECHNOLOGY, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT …

Reducing codon redundancy and screening effort of combinatorial protein libraries created by saturation mutagenesis

S Kille, CG Acevedo-Rocha, LP Parra… - ACS synthetic …, 2013 - ACS Publications
Saturation mutagenesis probes define sections of the vast protein sequence space.
However, even if randomization is limited this way, the combinatorial numbers problem is …

Increasing the activity of immobilized enzymes with nanoparticle conjugation

S Ding, AA Cargill, IL Medintz, JC Claussen - Current opinion in …, 2015 - Elsevier
Highlights•Enzyme activity/stability can be improved upon immobilization on nanoparticles
(NPs).•Five underlying physicochemical mechanisms describe enzyme–NP activity.•Carbon …

Methods for generating barcoded combinatorial libraries

RT Gill, A Garst, TEW Lipscomb, MC Bassalo… - US Patent …, 2018 - Google Patents
2018-02-08 Assigned to THE REGENTS OF THE UNIVERSITY OF COLORADO, A BODY
CORPORATE reassignment THE REGENTS OF THE UNIVERSITY OF COLORADO, A …