CTCF: an architectural protein bridging genome topology and function

CT Ong, VG Corces - Nature Reviews Genetics, 2014 - nature.com
The eukaryotic genome is organized in the three-dimensional nuclear space in a specific
manner that is both a cause and a consequence of its function. This organization is partly …

Three-dimensional genome architecture: players and mechanisms

A Pombo, N Dillon - Nature reviews Molecular cell biology, 2015 - nature.com
The different cell types of an organism share the same DNA, but during cell differentiation
their genomes undergo diverse structural and organizational changes that affect gene …

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation

W Li, D Notani, Q Ma, B Tanasa, E Nunez, AY Chen… - Nature, 2013 - nature.com
The functional importance of gene enhancers in regulated gene expression is well
established,,. In addition to widespread transcription of long non-coding RNAs (lncRNAs) in …

Molecular basis of β thalassemia and potential therapeutic targets

SL Thein - Blood Cells, Molecules, and Diseases, 2018 - Elsevier
The remarkable phenotypic diversity of β thalassemia that range from severe anemia and
transfusion-dependency, to a clinically asymptomatic state exemplifies how a spectrum of …

The RNA polymerase II carboxy-terminal domain (CTD) code

D Eick, M Geyer - Chemical reviews, 2013 - ACS Publications
The smallest viable unit of life is the cell. From bacteria to mammals, all cells use the same
nucleic acid-based universal code for the maintenance and inheritance of genetic …

The switch from fetal to adult hemoglobin

VG Sankaran, SH Orkin - Cold Spring …, 2013 - perspectivesinmedicine.cshlp.org
The fetal-to-adult hemoglobin switch and silencing of fetal hemoglobin (HbF) have been
areas of long-standing interest among hematologists, given the fact that clinical induction of …

Transcriptional regulation by (super) enhancers: from discovery to mechanisms

F Grosveld, J van Staalduinen… - Annual review of …, 2021 - annualreviews.org
Accurate control of gene expression in the right cell at the right moment is of fundamental
importance to animal development and homeostasis. At the heart of gene regulation lie the …

An overview of genome organization and how we got there: from FISH to Hi-C

J Fraser, I Williamson, WA Bickmore… - … and Molecular Biology …, 2015 - journals.asm.org
In humans, nearly two meters of genomic material must be folded to fit inside each
micrometer-scale cell nucleus while remaining accessible for gene transcription, DNA …

CTCF: the protein, the binding partners, the binding sites and their chromatin loops

SJB Holwerda, W de Laat - Philosophical Transactions of …, 2013 - royalsocietypublishing.org
CTCF has it all. The transcription factor binds to tens of thousands of genomic sites, some
tissue-specific, others ultra-conserved. It can act as a transcriptional activator, repressor and …

Enhancer function: mechanistic and genome-wide insights come together

JL Plank, A Dean - Molecular cell, 2014 - cell.com
Enhancers establish spatial or temporal patterns of gene expression that are critical for
development, yet our understanding of how these DNA cis-regulatory elements function from …