pathclip: Detection of genes and gene relations from biological pathway figures through image-text contrastive learning

F He, K Liu, Z Yang, Y Chen… - IEEE Journal of …, 2024 - ieeexplore.ieee.org
In biomedical literature, biological pathways are commonly described through a combination
of images and text. These pathways contain valuable information, including genes and their …

DNA methylation-mediated energy metabolism provides new insight into the quality losses during oyster reproductive process

X Wang, Y Wei, R Cong, W Wang, H Qi, G Zhang… - Aquaculture, 2024 - Elsevier
Excessive energy consumption during reproductive process seriously reduces the nutritive
value of oysters. Significant reduction of meat quality was detected in condition index and …

Deep learning uncovers histological patterns of YAP1/TEAD activity related to disease aggressiveness in cancer patients

B Schmauch, V Cabeli, OD Domingues, JE Le Douget… - iScience, 2025 - cell.com
Over the last decade, Hippo signaling has emerged as a major tumor-suppressing pathway.
Its dysregulation is associated with abnormal expression of YAP1 and TEAD-family genes …

miRNA deregulation and relationship with metabolic parameters after Mediterranean dietary intervention in BRCA-mutated women

S De Summa, D Traversa, A Daniele… - Frontiers in …, 2023 - frontiersin.org
Background Breast cancer onset is determined by a genetics-environment interaction.
BRCA1/2 gene alterations are often genetically shared in familial context, but also food …

Verteporfin Suppresses YAP-Induced Glycolysis in Breast Cancer Cells

H Chen, LF Zhang, Y Miao, Y **, X Li… - Journal of …, 2023 - Taylor & Francis
Objective The inhibition of the Hippo pathway through targeting the Yes-associated protein
(YAP) presents a novel and promising approach for treating tumors. However, the efficacy of …

In search of epigenetic hallmarks of different tissues: an integrative omics study of horse liver, lung, and heart

E Semik-Gurgul, K Pawlina-Tyszko, A Gurgul… - Mammalian …, 2024 - Springer
DNA methylation and microRNA (miRNA) expression are epigenetic mechanisms essential
for regulating tissue-specific gene expression and metabolic processes. However, high …

Ring finger protein 128 promotes, rather than inhibits, colorectal cancer progression by regulating the Hippo signaling pathway

S Ning, Y Chen, G Wang, Y Liu, Y Yang… - Frontiers in …, 2022 - frontiersin.org
Background Colorectal cancer is a common malignancy of the gastrointestinal tract, and its
incidence and mortality rates have increased in recent years. RNF128 is an E3 ubiquitin …

miR-564 and miR-718 expressions are downregulated in colorectal cancer tissues

D Mihcioglu, E Elihan, A Aytekin… - Turkish Journal of …, 2023 - degruyter.com
Objectives MicroRNAs (miRNAs) are small RNAs that are involved in regulating gene
expression and have an important role in biological pathways such as differentiation …