Geometric deep learning on molecular representations

K Atz, F Grisoni, G Schneider - Nature Machine Intelligence, 2021 - nature.com
Geometric deep learning (GDL) is based on neural network architectures that incorporate
and process symmetry information. GDL bears promise for molecular modelling applications …

Application of machine learning for drug–target interaction prediction

L Xu, X Ru, R Song - Frontiers in genetics, 2021 - frontiersin.org
Exploring drug–target interactions by biomedical experiments requires a lot of human,
financial, and material resources. To save time and cost to meet the needs of the present …

[PDF][PDF] KGNN: Knowledge graph neural network for drug-drug interaction prediction.

X Lin, Z Quan, ZJ Wang, T Ma, X Zeng - IJCAI, 2020 - xuanlin1991.github.io
Drug-drug interaction (DDI) prediction is a challenging problem in pharmacology and
clinical application, and effectively identifying potential D-DIs during clinical trials is critical …

A dual graph neural network for drug–drug interactions prediction based on molecular structure and interactions

M Ma, X Lei - PLOS Computational Biology, 2023 - journals.plos.org
Expressive molecular representation plays critical roles in researching drug design, while
effective methods are beneficial to learning molecular representations and solving related …

[HTML][HTML] Energy consumption prediction in water treatment plants using deep learning with data augmentation

F Harrou, A Dairi, A Dorbane, Y Sun - Results in Engineering, 2023 - Elsevier
Wastewater treatment plants (WWTPs) are energy-intensive facilities that play a critical role
in meeting stringent effluent quality regulations. Accurate prediction of energy consumption …

ML-DTI: mutual learning mechanism for interpretable drug–target interaction prediction

Z Yang, W Zhong, L Zhao… - The Journal of Physical …, 2021 - ACS Publications
Deep learning (DL) provides opportunities for the identification of drug–target interactions
(DTIs). The challenges of applying DL lie primarily with the lack of interpretability. Also, most …

Golgi_DF: Golgi proteins classification with deep forest

W Bao, Y Gu, B Chen, H Yu - Frontiers in Neuroscience, 2023 - frontiersin.org
Introduction Golgi is one of the components of the inner membrane system in eukaryotic
cells. Its main function is to send the proteins involved in the synthesis of endoplasmic …

Mol‐BERT: An Effective Molecular Representation with BERT for Molecular Property Prediction

J Li, X Jiang - Wireless Communications and Mobile Computing, 2021 - Wiley Online Library
Molecular property prediction is an essential task in drug discovery. Most computational
approaches with deep learning techniques either focus on designing novel molecular …

Improved prediction model of protein lysine crotonylation sites using bidirectional recurrent neural networks

SS Tng, NQK Le, HY Yeh… - Journal of proteome …, 2021 - ACS Publications
Histone lysine crotonylation (Kcr) is a post-translational modification of histone proteins that
is involved in the regulation of gene transcription, acute and chronic kidney injury …

The prediction of molecular toxicity based on BiGRU and GraphSAGE

J Liu, X Lei, Y Zhang, Y Pan - Computers in biology and medicine, 2023 - Elsevier
The prediction of molecules toxicity properties plays an crucial role in the realm of the drug
discovery, since it can swiftly screen out the expected drug moleculars. The conventional …