Structure-based drug design with geometric deep learning
Abstract Structure-based drug design uses three-dimensional geometric information of
macromolecules, such as proteins or nucleic acids, to identify suitable ligands. Geometric …
macromolecules, such as proteins or nucleic acids, to identify suitable ligands. Geometric …
The central role of density functional theory in the AI age
Density functional theory (DFT) plays a pivotal role in chemical and materials science
because of its relatively high predictive power, applicability, versatility, and computational …
because of its relatively high predictive power, applicability, versatility, and computational …
Accurate global machine learning force fields for molecules with hundreds of atoms
Global machine learning force fields, with the capacity to capture collective interactions in
molecular systems, now scale up to a few dozen atoms due to considerable growth of model …
molecular systems, now scale up to a few dozen atoms due to considerable growth of model …
A Euclidean transformer for fast and stable machine learned force fields
Recent years have seen vast progress in the development of machine learned force fields
(MLFFs) based on ab-initio reference calculations. Despite achieving low test errors, the …
(MLFFs) based on ab-initio reference calculations. Despite achieving low test errors, the …
MACE-OFF23: Transferable machine learning force fields for organic molecules
Classical empirical force fields have dominated biomolecular simulation for over 50 years.
Although widely used in drug discovery, crystal structure prediction, and biomolecular …
Although widely used in drug discovery, crystal structure prediction, and biomolecular …
Machine learned coarse-grained protein force-fields: Are we there yet?
The successful recent application of machine learning methods to scientific problems
includes the learning of flexible and accurate atomic-level force-fields for materials and …
includes the learning of flexible and accurate atomic-level force-fields for materials and …
Scaling the leading accuracy of deep equivariant models to biomolecular simulations of realistic size
This work brings the leading accuracy, sample efficiency, and robustness of deep
equivariant neural networks to the extreme computational scale. This is achieved through a …
equivariant neural networks to the extreme computational scale. This is achieved through a …
Machine learning coarse-grained potentials of protein thermodynamics
A generalized understanding of protein dynamics is an unsolved scientific problem, the
solution of which is critical to the interpretation of the structure-function relationships that …
solution of which is critical to the interpretation of the structure-function relationships that …
Ab initio characterization of protein molecular dynamics with AI2BMD
Biomolecular dynamics simulation is a fundamental technology for life sciences research,
and its usefulness depends on its accuracy and efficiency,–. Classical molecular dynamics …
and its usefulness depends on its accuracy and efficiency,–. Classical molecular dynamics …
Prospective de novo drug design with deep interactome learning
De novo drug design aims to generate molecules from scratch that possess specific
chemical and pharmacological properties. We present a computational approach utilizing …
chemical and pharmacological properties. We present a computational approach utilizing …