Framework for supporting genomic operations

A Kaitoua, P Pinoli, M Bertoni… - IEEE Transactions on …, 2016 - ieeexplore.ieee.org
Next Generation Sequencing (NGS) is a family of technologies for reading the DNA or RNA,
capable of producing whole genome sequences at an impressive speed, and causing a …

Evaluating cloud frameworks on genomic applications

M Bertoni, S Ceri, A Kaitoua… - 2015 IEEE International …, 2015 - ieeexplore.ieee.org
We are develo** a new, holistic data management system for genomics, which uses cloud-
based computing for querying thousands of heterogeneous genomic datasets. In our project …

Data management for heterogeneous genomic datasets

S Ceri, A Kaitoua, M Masseroli… - … /ACM transactions on …, 2016 - ieeexplore.ieee.org
Next Generation Sequencing (NGS), a family of technologies for reading DNA and RNA, is
changing biological research, and will soon change medical practice, by quickly providing …

Optimal binning for genomics

A Gulino, A Kaitoua, S Ceri - IEEE Transactions on Computers, 2018 - ieeexplore.ieee.org
Genome sequencing is expected to be the most prolific source of big data in the next
decade; millions of whole genome datasets will open new opportunities for biological …

StarDB: a large-scale DBMS for strings

M Sahli, E Mansour, P Kalnis - 2015 - repository.kaust.edu.sa
Strings and applications using them are proliferating in science and business. Currently,
strings are stored in file systems and processed using ad-hoc procedural code. Existing …

Modeling and querying genomic data

P Pinoli - 2017 - politesi.polimi.it
In the last decade, new technologies for fast DNA sequencing, known under the name of
next-generation sequencing (NGS), had just become available; they enable reading the …

[PDF][PDF] An Algebra for Protein Structure Data

Y Wang, R Sunderraman - World Academy of Science, Engineering and …, 2009 - Citeseer
This paper presents an algebraic approach to optimize queries in domain-specific database
management system for protein structure data. The approach involves the introduction of …

Querying and Mining Strings Made Easy

M Sahli, E Mansour, P Kalnis - … , ADMA 2017, Singapore, November 5–6 …, 2017 - Springer
With the advent of large string datasets in several scientific and business applications, there
is a growing need to perform ad-hoc analysis on strings. Currently, strings are stored …

[PDF][PDF] A Query Language for Large String Processing

M Sahli, E Mansour, P Kalnis - emansour.com
With the advent of large string datasets in several scientific and business applications, there
is a growing need to perform ad-hoc analysis on strings. Currently, strings are stored …

Modeling and querying genomic data

F Venco - 2016 - politesi.polimi.it
In the last decades we witnessed the birth and growth of the new fi eld of genomics, thanks
to the recent opportunities given by high throughput DNA sequencing. In recent years, the …