Chromatin accessibility and the regulatory epigenome

SL Klemm, Z Shipony, WJ Greenleaf - Nature Reviews Genetics, 2019 - nature.com
Physical access to DNA is a highly dynamic property of chromatin that plays an essential
role in establishing and maintaining cellular identity. The organization of accessible …

The roles of histone variants in fine-tuning chromatin organization and function

S Martire, LA Banaszynski - Nature reviews Molecular cell biology, 2020 - nature.com
Histones serve to both package and organize DNA within the nucleus. In addition to histone
post-translational modification and chromatin remodelling complexes, histone variants …

Global identification of SWI/SNF targets reveals compensation by EP400

BJE Martin, EF Ablondi, C Goglia, CA Mimoso… - Cell, 2023 - cell.com
Mammalian SWI/SNF chromatin remodeling complexes move and evict nucleosomes at
gene promoters and enhancers to modulate DNA access. Although SWI/SNF subunits are …

The histone variant H2A. Z in gene regulation

BD Giaimo, F Ferrante, A Herchenröther, SB Hake… - Epigenetics & …, 2019 - Springer
The histone variant H2A. Z is involved in several processes such as transcriptional control,
DNA repair, regulation of centromeric heterochromatin and, not surprisingly, is implicated in …

Born to run: control of transcription elongation by RNA polymerase II

FX Chen, ER Smith, A Shilatifard - Nature reviews Molecular cell …, 2018 - nature.com
The dynamic regulation of transcription elongation by RNA polymerase II (Pol II) is an
integral part of the implementation of gene expression programmes during development. In …

Recycling of modified H2A-H2B provides short-term memory of chromatin states

V Flury, N Reverón-Gómez, N Alcaraz… - Cell, 2023 - cell.com
Chromatin landscapes are disrupted during DNA replication and must be restored faithfully
to maintain genome regulation and cell identity. The histone H3-H4 modification landscape …

COMPASS and SWI/SNF complexes in development and disease

BK Cenik, A Shilatifard - Nature Reviews Genetics, 2021 - nature.com
Abstract The Trithorax group (TrxG) of proteins is a large family of epigenetic regulators that
form multiprotein complexes to counteract repressive developmental gene expression …

[HTML][HTML] Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo

MA Ricci, C Manzo, MF García-Parajo, M Lakadamyali… - Cell, 2015 - cell.com
Nucleosomes help structure chromosomes by compacting DNA into fibers. To gain insight
into how nucleosomes are arranged in vivo, we combined quantitative super-resolution …

[HTML][HTML] Modification of enhancer chromatin: what, how, and why?

E Calo, J Wysocka - Molecular cell, 2013 - cell.com
Emergence of form and function during embryogenesis arises in large part through cell-type-
and cell-state-specific variation in gene expression patterns, mediated by specialized cis …

The role of enhancers in cancer

I Sur, J Taipale - Nature Reviews Cancer, 2016 - nature.com
Enhancer elements function as the logic gates of the genetic regulatory circuitry. One of their
most important functions is the integration of extracellular signals with intracellular cell fate …