Uncultivated microbes in need of their own taxonomy
The great majority of microbial species remains uncultured, severely limiting their taxonomic
characterization and thus communication among scientists. Although Candidatus was …
characterization and thus communication among scientists. Although Candidatus was …
Pseudomonas genomes: diverse and adaptable
Members of the genus Pseudomonas inhabit a wide variety of environments, which is
reflected in their versatile metabolic capacity and broad potential for adaptation to fluctuating …
reflected in their versatile metabolic capacity and broad potential for adaptation to fluctuating …
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
A fundamental question in microbiology is whether there is continuum of genetic diversity
among genomes, or clear species boundaries prevail instead. Whole-genome similarity …
among genomes, or clear species boundaries prevail instead. Whole-genome similarity …
The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses
16S ribosomal RNA currently represents the most important target of study in bacterial
ecology. Its use for the description of bacterial diversity is, however, limited by the presence …
ecology. Its use for the description of bacterial diversity is, however, limited by the presence …
Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans
Pseudomonas fluorescens is not generally considered a bacterial pathogen in humans;
however, multiple culture-based and culture-independent studies have identified it at low …
however, multiple culture-based and culture-independent studies have identified it at low …
Microbial genomic taxonomy.
CC Thompson, L Vidal, V Salazar… - Trends in the …, 2021 - cabidigitallibrary.org
This book chapter argues for an open-access catalogue of taxonomic descriptions with
prototypes; diagnostic tables; and links to culture collections, to genome and gene …
prototypes; diagnostic tables; and links to culture collections, to genome and gene …
A catalog of reference genomes from the human microbiome
Human Microbiome Jumpstart Reference Strains … - Science, 2010 - science.org
The human microbiome refers to the community of microorganisms, including prokaryotes,
viruses, and microbial eukaryotes, that populate the human body. The National Institutes of …
viruses, and microbial eukaryotes, that populate the human body. The National Institutes of …
DNA sequence‐based analysis of the Pseudomonas species
Partial sequences of four core 'housekee**'genes (16S rRNA, gyrB, rpoB and rpoD) of the
type strains of 107 Pseudomonas species were analysed in order to obtain a …
type strains of 107 Pseudomonas species were analysed in order to obtain a …
The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi‐arid soils
Biogeochemical processes and ecosystemic functions are mostly driven by soil microbial
communities. However, most methods focus on evaluating the total microbial community and …
communities. However, most methods focus on evaluating the total microbial community and …
Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead
Advancing prokaryotic taxonomy constitutes a contemporary academic challenge as well as
practical necessity. Genome sequencing has greatly facilitated the evaluation of the current …
practical necessity. Genome sequencing has greatly facilitated the evaluation of the current …