Posterior summarization in Bayesian phylogenetics using Tracer 1.7

A Rambaut, AJ Drummond, D **e, G Baele… - Systematic …, 2018 - academic.oup.com
Cancer is one of the leading causes of death worldwide. There is a definite need for novel
approaches to improve the diagnostics and treatment of cancers. The pathological …

[HTML][HTML] Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and …

J Houbraken, S Kocsubé, CM Visagie, N Yilmaz… - Studies in mycology, 2020 - Elsevier
The Eurotiales is a relatively large order of Ascomycetes with members frequently having
positive and negative impact on human activities. Species within this order gain attention …

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

I Letunic, P Bork - Nucleic acids research, 2019 - academic.oup.com
Abstract The Interactive Tree Of Life (https://itol. embl. de) is an online tool for the display,
manipulation and annotation of phylogenetic and other trees. It is freely available and open …

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

D Zhang, F Gao, I Jakovlić, H Zou… - Molecular ecology …, 2020 - Wiley Online Library
Multigene and genomic data sets have become commonplace in the field of phylogenetics,
but many existing tools are not designed for such data sets, which often makes the analysis …

Ancient gene linkages support ctenophores as sister to other animals

DT Schultz, SHD Haddock, JV Bredeson, RE Green… - Nature, 2023 - nature.com
A central question in evolutionary biology is whether sponges or ctenophores (comb jellies)
are the sister group to all other animals. These alternative phylogenetic hypotheses imply …

ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models

D Darriba, D Posada, AM Kozlov… - Molecular biology …, 2020 - academic.oup.com
ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular
tools for selecting the best-fit nucleotide and amino acid substitution models, respectively …

Systematic revision of Symbiodiniaceae highlights the antiquity and diversity of coral endosymbionts

TC LaJeunesse, JE Parkinson, PW Gabrielson… - Current Biology, 2018 - cell.com
The advent of molecular data has transformed the science of organizing and studying life on
Earth. Genetics-based evidence provides fundamental insights into the diversity, ecology …

TNT version 1.5, including a full implementation of phylogenetic morphometrics

PA Goloboff, SA Catalano - Cladistics, 2016 - Wiley Online Library
Abstract Version 1.5 of the computer program TNT completely integrates landmark data into
phylogenetic analysis. Landmark data consist of coordinates (in two or three dimensions) for …

Complete nitrification by Nitrospira bacteria

H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold… - Nature, 2015 - nature.com
Nitrification, the oxidation of ammonia via nitrite to nitrate, has always been considered to be
a two-step process catalysed by chemolithoautotrophic microorganisms oxidizing either …

Inferring the mammal tree: species-level sets of phylogenies for questions in ecology, evolution, and conservation

NS Upham, JA Esselstyn, W Jetz - PLoS biology, 2019 - journals.plos.org
Big, time-scaled phylogenies are fundamental to connecting evolutionary processes to
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …