A review of long‐branch attraction
J Bergsten - Cladistics, 2005 - Wiley Online Library
The history of long‐branch attraction, and in particular methods suggested to detect and
avoid the artifact to date, is reviewed. Methods suggested to avoid LBA‐artifacts include …
avoid the artifact to date, is reviewed. Methods suggested to avoid LBA‐artifacts include …
Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA
DNA data has been widely used in animal phylogenetic studies over the past 15 years. Here
we review how these studies have used advances in knowledge of molecular evolutionary …
we review how these studies have used advances in knowledge of molecular evolutionary …
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
We revisit statistical tests for branches of evolutionary trees reconstructed upon molecular
data. A new, fast, approximate likelihood-ratio test (aLRT) for branches is presented here as …
data. A new, fast, approximate likelihood-ratio test (aLRT) for branches is presented here as …
A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
Background Several phylogenetic approaches have been developed to estimate species
trees from collections of gene trees. However, maximum likelihood approaches for …
trees from collections of gene trees. However, maximum likelihood approaches for …
Inconsistency of phylogenetic estimates from concatenated data under coalescence
Although multiple gene sequences are becoming increasingly available for molecular
phylogenetic inference, the analysis of such data has largely relied on inference methods …
phylogenetic inference, the analysis of such data has largely relied on inference methods …
Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models
What does the posterior probability of a phylogenetic tree mean? This simulation study
shows that Bayesian posterior probabilities have the meaning that is typically ascribed to …
shows that Bayesian posterior probabilities have the meaning that is typically ascribed to …
An extreme case of plant–insect codiversification: figs and fig-pollinating wasps
It is thought that speciation in phytophagous insects is often due to colonization of novel host
plants, because radiations of plant and insect lineages are typically asynchronous. Recent …
plants, because radiations of plant and insect lineages are typically asynchronous. Recent …
[HTML][HTML] New World direct-develo** frogs (Anura: Terrarana): molecular phylogeny, classification, biogeography, and conservation
New World frogs recently placed in a single, enormous family (Brachycephalidae) have
direct development and reproduce on land, often far away from water. DNA sequences from …
direct development and reproduce on land, often far away from water. DNA sequences from …
A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach
GH Sung, JM Sung, NL Hywel-Jones… - Molecular phylogenetics …, 2007 - Elsevier
Multi-gene phylogenetic analyses were conducted to address the evolution of
Clavicipitaceae (Ascomycota). Data are presented here for approximately 5900 base pairs …
Clavicipitaceae (Ascomycota). Data are presented here for approximately 5900 base pairs …
Quartet sampling distinguishes lack of support from conflicting support in the green plant tree of life
Premise of the Study Phylogenetic support has been difficult to evaluate within the green
plant tree of life partly due to a lack of specificity between conflicted versus poorly informed …
plant tree of life partly due to a lack of specificity between conflicted versus poorly informed …