A phylogenetic tree can reflect the evolutionary relationships between species or gene
families, and they play a critical role in modern biological research. In this review, we …

The data output from microbiome research is growing at an accelerating rate, yet mining the
data quickly and efficiently remains difficult. There is still a lack of an effective data structure …

How barriers to gene flow arise and are maintained are key questions in evolutionary
biology. Speciation research has mainly focused on barriers that occur either before mating …

Centromeres are critical for cell division, loading CENH3 or CENPA histone variant
nucleosomes, directing kinetochore formation and allowing chromosome segregation …

Ggtree is an R/Bioconductor package for visualizing tree‐like structures and associated
data. After 5 years of continual development, ggtree has been evolved as a package suite …

A new variant of Streptococcus pyogenes serotype M1 (designated 'M1UK') has been
reported in the United Kingdom, linked with seasonal scarlet fever surges, marked increase …

We introduce metaMDBG, a metagenomics assembler for PacBio HiFi reads. MetaMDBG
combines a de Bruijn graph assembly in a minimizer space with an iterative assembly over …

The identification of the conserved and variable regions in the multiple sequence alignment
(MSA) is critical to accelerating the process of understanding the function of genes. MSA …

We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …

Data Integration, Manipulation and Visualization of Phylogenetic Trees introduces and
demonstrates data integration, manipulation and visualization of phylogenetic trees using a …