Mitosis domain generalization in histopathology images—the MIDOG challenge
The density of mitotic figures (MF) within tumor tissue is known to be highly correlated with
tumor proliferation and thus is an important marker in tumor grading. Recognition of MF by …
tumor proliferation and thus is an important marker in tumor grading. Recognition of MF by …
Virtual alignment of pathology image series for multi-gigapixel whole slide images
Interest in spatial omics is on the rise, but generation of highly multiplexed images remains
challenging, due to cost, expertise, methodical constraints, and access to technology. An …
challenging, due to cost, expertise, methodical constraints, and access to technology. An …
Information mismatch in PHH3-assisted mitosis annotation leads to interpretation shifts in H&E slide analysis
The count of mitotic figures (MFs) observed in hematoxylin and eosin (H&E)-stained slides is
an important prognostic marker, as it is a measure for tumor cell proliferation. However, the …
an important prognostic marker, as it is a measure for tumor cell proliferation. However, the …
[HTML][HTML] RegWSI: Whole slide image registration using combined deep feature-and intensity-based methods: Winner of the ACROBAT 2023 challenge
Background and objective The automatic registration of differently stained whole slide
images (WSIs) is crucial for improving diagnosis and prognosis by fusing complementary …
images (WSIs) is crucial for improving diagnosis and prognosis by fusing complementary …
End-to-end affine registration framework for histopathological images with weak annotations
Y Lin, Z Liang, Y He, W Huang, T Guan - Computer Methods and Programs …, 2023 - Elsevier
Abstract Background and Objective Histopathological image registration is an essential
component in digital pathology and biomedical image analysis. Deep-learning-based …
component in digital pathology and biomedical image analysis. Deep-learning-based …
Multi-scanner canine cutaneous squamous cell carcinoma histopathology dataset
In histopathology, scanner-induced domain shifts are known to impede the performance of
trained neural networks when tested on unseen data. Multidomain pre-training or dedicated …
trained neural networks when tested on unseen data. Multidomain pre-training or dedicated …
DeeperHistReg: Robust Whole Slide Images Registration Framework
DeeperHistReg is a software framework dedicated to registering whole slide images (WSIs)
acquired using multiple stains. It allows one to perform the preprocessing, initial alignment …
acquired using multiple stains. It allows one to perform the preprocessing, initial alignment …
Transformation from hematoxylin-and-eosin staining to Ki-67 immunohistochemistry digital staining images using deep learning: experimental validation on the …
C Ji, K Oshima, T Urata, F Kimura… - Journal of Medical …, 2024 - spiedigitallibrary.org
Purpose Endometrial cancer (EC) is one of the most common types of cancer affecting
women. While the hematoxylin-and-eosin (H&E) staining remains the standard for …
women. While the hematoxylin-and-eosin (H&E) staining remains the standard for …
Rethinking U-net Skip Connections for Biomedical Image Segmentation
The U-net architecture has significantly impacted deep learning-based segmentation of
medical images. Through the integration of long-range skip connections, it facilitated the …
medical images. Through the integration of long-range skip connections, it facilitated the …
Mind the Gap: Scanner-induced domain shifts pose challenges for representation learning in histopathology
Computer-aided systems in histopathology are often challenged by various sources of
domain shift that impact the performance of these algorithms considerably. We investigated …
domain shift that impact the performance of these algorithms considerably. We investigated …