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Customizing cellular signal processing by synthetic multi-level regulatory circuits
As synthetic biology permeates society, the signal processing circuits in engineered living
systems must be customized to meet practical demands. Towards this mission, novel …
systems must be customized to meet practical demands. Towards this mission, novel …
Predictive biology: modelling, understanding and harnessing microbial complexity
Predictive biology is the next great chapter in synthetic and systems biology, particularly for
microorganisms. Tasks that once seemed infeasible are increasingly being realized such as …
microorganisms. Tasks that once seemed infeasible are increasingly being realized such as …
Application of combinatorial optimization strategies in synthetic biology
In the first wave of synthetic biology, genetic elements, combined into simple circuits, are
used to control individual cellular functions. In the second wave of synthetic biology, the …
used to control individual cellular functions. In the second wave of synthetic biology, the …
Supercoiling-mediated feedback rapidly couples and tunes transcription
CP Johnstone, KE Galloway - Cell reports, 2022 - cell.com
Transcription induces a wave of DNA supercoiling, altering the binding affinity of RNA
polymerases and resha** the biochemical landscape of gene regulation. As supercoiling …
polymerases and resha** the biochemical landscape of gene regulation. As supercoiling …
Bottom-up construction of complex biomolecular systems with cell-free synthetic biology
Cell-free systems offer a promising approach to engineer biology since their open nature
allows for well-controlled and characterized reaction conditions. In this review, we discuss …
allows for well-controlled and characterized reaction conditions. In this review, we discuss …
Multistable and dynamic CRISPRi-based synthetic circuits
Gene expression control based on CRISPRi (clustered regularly interspaced short
palindromic repeats interference) has emerged as a powerful tool for creating synthetic gene …
palindromic repeats interference) has emerged as a powerful tool for creating synthetic gene …
Computational design of small transcription activating RNAs for versatile and dynamic gene regulation
A longstanding goal of synthetic biology has been the programmable control of cellular
functions. Central to this is the creation of versatile regulatory toolsets that allow for …
functions. Central to this is the creation of versatile regulatory toolsets that allow for …
Context-dependent redesign of robust synthetic gene circuits
Cells provide dynamic platforms for executing exogenous genetic programs in synthetic
biology, resulting in highly context-dependent circuit performance. Recent years have seen …
biology, resulting in highly context-dependent circuit performance. Recent years have seen …
An endoribonuclease-based feedforward controller for decoupling resource-limited genetic modules in mammalian cells
Synthetic biology has the potential to bring forth advanced genetic devices for applications
in healthcare and biotechnology. However, accurately predicting the behavior of engineered …
in healthcare and biotechnology. However, accurately predicting the behavior of engineered …
Engineering AraC to make it responsive to light instead of arabinose
The l-arabinose-responsive AraC and its cognate PBAD promoter underlie one of the most
often used chemically inducible prokaryotic gene expression systems in microbiology and …
often used chemically inducible prokaryotic gene expression systems in microbiology and …