Minimum information about an uncultivated virus genome (MIUViG)
We present an extension of the Minimum Information about any (x) Sequence (MIxS)
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
Phage puppet masters of the marine microbial realm
Viruses numerically dominate our oceans; however, we have only just begun to document
the diversity, host range and infection dynamics of marine viruses, as well as the subsequent …
the diversity, host range and infection dynamics of marine viruses, as well as the subsequent …
ViPTree: the viral proteomic tree server
ViPTree is a web server provided through GenomeNet to generate viral proteomic trees for
classification of viruses based on genome-wide similarities. Users can upload viral genomes …
classification of viruses based on genome-wide similarities. Users can upload viral genomes …
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Ocean microbes drive biogeochemical cycling on a global scale. However, this cycling is
constrained by viruses that affect community composition, metabolic activity, and …
constrained by viruses that affect community composition, metabolic activity, and …
Determinants of community structure in the global plankton interactome
Species interaction networks are shaped by abiotic and biotic factors. Here, as part of the
Tara Oceans project, we studied the photic zone interactome using environmental factors …
Tara Oceans project, we studied the photic zone interactome using environmental factors …
Patterns and ecological drivers of ocean viral communities
Viruses influence ecosystems by modulating microbial population size, diversity, metabolic
outputs, and gene flow. Here, we use quantitative double-stranded DNA (dsDNA) viral …
outputs, and gene flow. Here, we use quantitative double-stranded DNA (dsDNA) viral …
Marine actinomycetes, new sources of biotechnological products
SV Jagannathan, EM Manemann, SE Rowe… - Marine Drugs, 2021 - mdpi.com
The Actinomycetales order is one of great genetic and functional diversity, including diversity
in the production of secondary metabolites which have uses in medical, environmental …
in the production of secondary metabolites which have uses in medical, environmental …
Computational approaches to predict bacteriophage–host relationships
Metagenomics has changed the face of virus discovery by enabling the accurate
identification of viral genome sequences without requiring isolation of the viruses. As a …
identification of viral genome sequences without requiring isolation of the viruses. As a …
Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation
AL Grazziotin, EV Koonin… - Nucleic acids research, 2016 - academic.oup.com
Viruses are the most abundant and diverse biological entities on earth, and while most of
this diversity remains completely unexplored, advances in genome sequencing have …
this diversity remains completely unexplored, advances in genome sequencing have …
Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
The ecological importance of viruses is now widely recognized, yet our limited knowledge of
viral sequence space and virus–host interactions precludes accurate prediction of their roles …
viral sequence space and virus–host interactions precludes accurate prediction of their roles …