MicroRNA in control of gene expression: an overview of nuclear functions

C Catalanotto, C Cogoni, G Zardo - International journal of molecular …, 2016 - mdpi.com
The finding that small non-coding RNAs (ncRNAs) are able to control gene expression in a
sequence specific manner has had a massive impact on biology. Recent improvements in …

Regulatory R-loops as facilitators of gene expression and genome stability

C Niehrs, B Luke - Nature reviews Molecular cell biology, 2020 - nature.com
R-loops are three-stranded structures that harbour an RNA–DNA hybrid and frequently form
during transcription. R-loop misregulation is associated with DNA damage, transcription …

R loops: new modulators of genome dynamics and function

JM Santos-Pereira, A Aguilera - Nature Reviews Genetics, 2015 - nature.com
R loops are nucleic acid structures composed of an RNA–DNA hybrid and a displaced
single-stranded DNA. Recently, evidence has emerged that R loops occur more often in the …

R loops: from transcription byproducts to threats to genome stability

A Aguilera, T García-Muse - Molecular cell, 2012 - cell.com
RNA: DNA hybrid structures known as R loops were thought to be rare byproducts of
transcription. In the last decade, however, accumulating evidence has pointed to a new view …

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters

PA Ginno, PL Lott, HC Christensen, I Korf, F Chédin - Molecular cell, 2012 - cell.com
CpG islands (CGIs) function as promoters for approximately 60% of human genes. Most of
these elements remain protected from CpG methylation, a prevalent epigenetic modification …

A double-edged sword: R loops as threats to genome integrity and powerful regulators of gene expression

K Skourti-Stathaki, NJ Proudfoot - Genes & development, 2014 - genesdev.cshlp.org
R loops are three-stranded nucleic acid structures that comprise nascent RNA hybridized
with the DNA template, leaving the nontemplate DNA single-stranded. R loops form naturally …

A perspective of polyamine metabolism

HM Wallace, AV Fraser, A Hughes - Biochemical Journal, 2003 - portlandpress.com
Polyamines are essential for the growth and function of normal cells. They interact with
various macromolecules, both electrostatically and covalently and, as a consequence, have …

PARP1 associates with R-loops to promote their resolution and genome stability

N Laspata, P Kaur, SY Mersaoui, D Muoio… - Nucleic acids …, 2023 - academic.oup.com
PARP1 is a DNA-dependent ADP-Ribose transferase with ADP-ribosylation activity that is
triggered by DNA breaks and non-B DNA structures to mediate their resolution. PARP1 was …

Triplex DNA structures

MD Frank-Kamenetskii, SM Mirkin - Annual review of …, 1995 - annualreviews.org
A DNA triplex is formed when pyrimidine or purine bases occupy the major groove of the
DNA double Helix forming Hoogsteen pairs with purines of the Watson-Crick basepairs …

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells

K Yu, F Chedin, CL Hsieh, TE Wilson, MR Lieber - Nature immunology, 2003 - nature.com
The mechanism responsible for immunoglobulin class switch recombination is unknown.
Previous work has shown that class switch sequences have the unusual property of forming …