Cryptic species as a window into the paradigm shift of the species concept

C Fišer, CT Robinson, F Malard - Molecular Ecology, 2018 - Wiley Online Library
The species concept is the cornerstone of biodiversity science, and any paradigm shift in the
delimitation of species affects many research fields. Many biologists now are embracing a …

How to fail at species delimitation

BC Carstens, TA Pelletier, NM Reid… - Molecular ecology, 2013 - Wiley Online Library
Species delimitation is the act of identifying species‐level biological diversity. In recent
years, the field has witnessed a dramatic increase in the number of methods available for …

ASAP: assemble species by automatic partitioning

N Puillandre, S Brouillet, G Achaz - Molecular Ecology …, 2021 - Wiley Online Library
Abstract Here, we describe Assemble Species by Automatic Partitioning (ASAP), a new
method to build species partitions from single locus sequence alignments (ie, barcode data …

[KSIĄŻKA][B] Species concepts in biology

FE Zachos - 2016 - Springer
The species problem has triggered the publication of an almost infinite number of theoretical
and practical studies, including quite a number of books. I should, therefore, perhaps briefly …

Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy

S Mills, JA Alcántara-Rodríguez, J Ciros-Pérez… - Hydrobiologia, 2017 - Springer
Understanding patterns and processes in biological diversity is a critical task given current
and rapid environmental change. Such knowledge is even more essential when the taxa …

Guidelines for DNA taxonomy, with a focus on the meiofauna

D Fontaneto, JF Flot, CQ Tang - Marine Biodiversity, 2015 - Springer
Describing biological diversity is a challenging endeavour, especially for the small, cryptic
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …

The hitchhiker's guide to single‐locus species delimitation

S Dellicour, JF Flot - Molecular Ecology Resources, 2018 - Wiley Online Library
Molecular approaches to species delimitation are increasingly used to ascertain the number
of species in a sample prior to taxonomic, ecological or physiological studies. Although …

With eyes wide open: a revision of species within and closely related to the Pocillopora damicornis species complex (Scleractinia; Pocilloporidae) using morphology …

S Schmidt-Roach, KJ Miller, P Lundgren… - Zoological Journal of …, 2014 - academic.oup.com
Molecular studies have been instrumental for refining species boundaries in the coral genus
Pocillopora and revealing hidden species diversity within the extensively studied global …

iTaxoTools 0.1: Kickstarting a specimen-based software toolkit for taxonomists

M Vences, A Miralles, S Brouillet, J Ducasse… - BioRxiv, 2021 - biorxiv.org
While powerful and user-friendly software suites exist for phylogenetics, and an impressive
cybertaxomic infrastructure of online species databases has been set up in the past two …

Effects of phylogenetic reconstruction method on the robustness of species delimitation using single‐locus data

CQ Tang, AM Humphreys, D Fontaneto… - Methods in ecology …, 2014 - Wiley Online Library
Coalescent‐based species delimitation methods combine population genetic and
phylogenetic theory to provide an objective means for delineating evolutionarily significant …