Proteingym: Large-scale benchmarks for protein fitness prediction and design

P Notin, A Kollasch, D Ritter… - Advances in …, 2023 - proceedings.neurips.cc
Predicting the effects of mutations in proteins is critical to many applications, from
understanding genetic disease to designing novel proteins to address our most pressing …

PRKN-linked familial Parkinson's disease: cellular and molecular mechanisms of disease-linked variants

L Clausen, J Okarmus, V Voutsinos, M Meyer… - Cellular and Molecular …, 2024 - Springer
Parkinson's disease (PD) is a common and incurable neurodegenerative disorder that
arises from the loss of dopaminergic neurons in the substantia nigra and is mainly …

Deep mutational scanning reveals a correlation between degradation and toxicity of thousands of aspartoacylase variants

M Grønbæk-Thygesen, V Voutsinos… - Nature …, 2024 - nature.com
Unstable proteins are prone to form non-native interactions with other proteins and thereby
may become toxic. To mitigate this, destabilized proteins are targeted by the protein quality …

Site-saturation mutagenesis of 500 human protein domains

A Beltran, X Jiang, Y Shen, B Lehner - Nature, 2025 - nature.com
Missense variants that change the amino acid sequences of proteins cause one-third of
human genetic diseases. Tens of millions of missense variants exist in the current human …

Site saturation mutagenesis of 500 human protein domains reveals the contribution of protein destabilization to genetic disease

A Beltran, X Jiang, Y Shen, B Lehner - bioRxiv, 2024 - biorxiv.org
Missense variants that change the amino acid sequences of proteins cause one third of
human genetic diseases. Tens of millions of missense variants exist in the current human …

Therapeutic potential of Parkin and its regulation in Parkinson's disease

N Safreena, IC Nair, G Chandra - Biochemical Pharmacology, 2024 - Elsevier
Parkinson's disease (PD) is a debilitating neurodegenerative disorder characterized by the
progressive loss of dopaminergic neurons in the midbrain substantia nigra, resulting in …

Variant effect predictor correlation with functional assays is reflective of clinical classification performance

BJ Livesey, JA Marsh - bioRxiv, 2024 - biorxiv.org
Background Understanding the relationship between protein sequence and function is
crucial for accurate genetic variant classification. Variant effect predictors (VEPs) play a vital …

Importance of an N-terminal structural switch in the distinction between small RNA-bound and free ARGONAUTE

S Bressendorff, IMZ Sjøgaard, A Prestel… - Nature Structural & …, 2025 - nature.com
ARGONAUTE (AGO) proteins bind to small non-coding RNAs to form RNA-induced
silencing complexes. In the RNA-bound state, AGO is stable while RNA-free AGO turns over …

[HTML][HTML] Structural and Functional Characterization of the Most Frequent Pathogenic PRKN Substitution p. R275W

BA Bustillos, LT Cocker, MA Coban, CA Weber… - Cells, 2024 - mdpi.com
Mutations in the PINK1 and PRKN genes are the most frequent genetic cause of early-onset
Parkinson disease. The pathogenic p. R275W substitution in PRKN is the most frequent …

Structural basis for the pathogenicity of parkin catalytic domain mutants

JP Wagner, V Sauvé, A Saran, K Gehring - Journal of Biological Chemistry, 2025 - jbc.org
Mutations in the E3 ubiquitin ligase parkin cause a familial form of Parkinson's disease.
Parkin and the mitochondrial kinase PTEN-induced kinase 1 assure quality control of …