Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

The development of terrestrial ecosystems emerging after glacier retreat

GF Ficetola, S Marta, A Guerrieri, I Cantera, A Bonin… - Nature, 2024 - nature.com
The global retreat of glaciers is dramatically altering mountain and high-latitude landscapes,
with new ecosystems develo** from apparently barren substrates,,–. The study of these …

Dos and don'ts when inferring assembly rules from diversity patterns

T Münkemüller, L Gallien, LJ Pollock… - Global Ecology and …, 2020 - Wiley Online Library
Aim More than ever, ecologists seek to understand how species are distributed and have
assembled into communities using the “filtering framework”. This framework is based on the …

Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes

A Polanco Fernández, V Marques, F Fopp… - Environmental …, 2021 - Wiley Online Library
Environmental DNA (eDNA) analysis is a revolutionary method to monitor marine
biodiversity from animal DNA traces. Examining the capacity of eDNA to provide accurate …

Integrating eDNA metabarcoding and simultaneous underwater visual surveys to describe complex fish communities in a marine biodiversity hotspot

T Valdivia‐Carrillo, A Rocha‐Olivares… - Molecular Ecology …, 2021 - Wiley Online Library
Marine biodiversity can be surveyed using underwater visual censuses and recently with
eDNA metabarcoding. Although a promising tool, eDNA studies have shown contrasting …

Benchmarking bioinformatic tools for fast and accurate eDNA metabarcoding species identification

L Mathon, A Valentini, PE Guérin… - Molecular Ecology …, 2021 - Wiley Online Library
Bioinformatic analysis of eDNA metabarcoding data is a crucial step toward rigorously
assessing biodiversity. Many programs are now available for each step of the required …

Marine water environmental DNA metabarcoding provides a comprehensive fish diversity assessment and reveals spatial patterns in a large oceanic area

N Fraija‐Fernández, MC Bouquieaux… - Ecology and …, 2020 - Wiley Online Library
Current methods for monitoring marine fish (including bony fishes and elasmobranchs)
diversity mostly rely on trawling surveys, which are invasive, costly, and time‐consuming …

Current status of Phytophthora in Australia

TI Burgess, J Edwards, A Drenth… - … and Evolution of …, 2021 - ingentaconnect.com
Among the most economically relevant and environmentally devastating diseases globally
are those caused by Phytophthora species. In Australia, production losses in agriculture and …

How to design optimal eDNA sampling strategies for biomonitoring in river networks

L Carraro, JB Stauffer, F Altermatt - Environmental DNA, 2021 - Wiley Online Library
The current biodiversity crisis calls for appropriate methods for assessing biodiversity. In this
respect, environmental DNA (eDNA) holds great promise, especially for aquatic ecosystems …