Machine-learning solutions for the analysis of single-particle diffusion trajectories

H Seckler, J Szwabinski, R Metzler - The Journal of Physical …, 2023 - ACS Publications
Single-particle traces of the diffusive motion of molecules, cells, or animals are by now
routinely measured, similar to stochastic records of stock prices or weather data …

Single-particle diffusional fingerprinting: A machine-learning framework for quantitative analysis of heterogeneous diffusion

HD Pinholt, SSR Bohr, JF Iversen… - Proceedings of the …, 2021 - National Acad Sciences
Single-particle tracking (SPT) is a key tool for quantitative analysis of dynamic biological
processes and has provided unprecedented insights into a wide range of systems such as …

Measurement of anomalous diffusion using recurrent neural networks

S Bo, F Schmidt, R Eichhorn, G Volpe - Physical Review E, 2019 - APS
Anomalous diffusion occurs in many physical and biological phenomena, when the growth
of the mean squared displacement (MSD) with time has an exponent different from one. We …

Classification, inference and segmentation of anomalous diffusion with recurrent neural networks

A Argun, G Volpe, S Bo - Journal of Physics A: Mathematical and …, 2021 - iopscience.iop.org
Countless systems in biology, physics, and finance undergo diffusive dynamics. Many of
these systems, including biomolecules inside cells, active matter systems and foraging …

Classification of particle trajectories in living cells: Machine learning versus statistical testing hypothesis for fractional anomalous diffusion

J Janczura, P Kowalek, H Loch-Olszewska… - Physical Review E, 2020 - APS
Single-particle tracking (SPT) has become a popular tool to study the intracellular transport
of molecules in living cells. Inferring the character of their dynamics is important, because it …

Synchronization for fractional-order reaction–diffusion competitive neural networks with leakage and discrete delays

S Yang, H Jiang, C Hu, J Yu - Neurocomputing, 2021 - Elsevier
This paper is concerned with the synchronization of fractional-order competitive neural
networks with reaction–diffusion terms and time delays. A novel method that combines the …

Characterization of anomalous diffusion classical statistics powered by deep learning (CONDOR)

A Gentili, G Volpe - Journal of Physics A: Mathematical and …, 2021 - iopscience.iop.org
Diffusion processes are important in several physical, chemical, biological and human
phenomena. Examples include molecular encounters in reactions, cellular signalling, the …

[HTML][HTML] Trajectory Analysis in Single-Particle Tracking: From Mean Squared Displacement to Machine Learning Approaches

C Schirripa Spagnolo, S Luin - International Journal of Molecular …, 2024 - mdpi.com
Single-particle tracking is a powerful technique to investigate the motion of molecules or
particles. Here, we review the methods for analyzing the reconstructed trajectories, a …

Universal spectral features of different classes of random-diffusivity processes

V Sposini, DS Grebenkov, R Metzler… - New Journal of …, 2020 - iopscience.iop.org
Stochastic models based on random diffusivities, such as the diffusing-diffusivity approach,
are popular concepts for the description of non-Gaussian diffusion in heterogeneous media …

Impact of feature choice on machine learning classification of fractional anomalous diffusion

H Loch-Olszewska, J Szwabiński - Entropy, 2020 - mdpi.com
The growing interest in machine learning methods has raised the need for a careful study of
their application to the experimental single-particle tracking data. In this paper, we present …