[PDF][PDF] Molecular markers in phylogenetic studies-a review

A Patwardhan, S Ray, A Roy - Journal of Phylogenetics & …, 2014 - academia.edu
Uses of molecular markers in the phylogenetic studies of various organisms have become
increasingly important in recent times. This review gives an overview of different molecular …

Evolutionary ecology of the marine Roseobacter clade

H Luo, MA Moran - Microbiology and Molecular Biology Reviews, 2014 - Am Soc Microbiol
Members of the Roseobacter clade are equipped with a tremendous diversity of metabolic
capabilities, which in part explains their success in so many different marine habitats. Ideas …

RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language

S Höhna, MJ Landis, TA Heath, B Boussau… - Systematic …, 2016 - academic.oup.com
Programs for Bayesian inference of phylogeny currently implement a unique and fixed suite
of models. Consequently, users of these software packages are simultaneously forced to …

RELAX: detecting relaxed selection in a phylogenetic framework

JO Wertheim, B Murrell, MD Smith… - Molecular biology …, 2015 - academic.oup.com
Relaxation of selective strength, manifested as a reduction in the efficiency or intensity of
natural selection, can drive evolutionary innovation and presage lineage extinction or loss of …

Resolving difficult phylogenetic questions: why more sequences are not enough

H Philippe, H Brinkmann, DV Lavrov… - PLoS …, 2011 - journals.plos.org
In the quest to reconstruct the Tree of Life, researchers have increasingly turned to
phylogenomics, the inference of phylogenetic relationships using genome-scale data (Box …

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

N Galtier, M Gouy, C Gautier - Bioinformatics, 1996 - academic.oup.com
Abstract SEA VIEW and PHYLO_WIN are two graphic tools for X Windows-Unix computers
dedicated to sequence alignment and molecular phylogenetics. SEA VIEW is a sequence …

[書籍][B] Analysis of Phylogenetics and Evolution with R

E Paradis - 2012 - Springer
Analysis of Phylogenetics and Evolution with R | SpringerLink Skip to main content
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Phylogenetic incongruence: window into genome history and molecular evolution

JF Wendel, JJ Doyle - Molecular systematics of plants II: DNA sequencing, 1998 - Springer
The field of systematic biology has been revitalized and transformed during the last few
decades by the confluence of phylogenetic thinking with ready access to the tools of …

Protein phylogenies and signature sequences: a reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes

RS Gupta - Microbiology and Molecular Biology Reviews, 1998 - Am Soc Microbiol
The presence of shared conserved insertion or deletions (indels) in protein sequences is a
special type of signature sequence that shows considerable promise for phylogenetic …

Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins

RP Hirt, JM Logsdon Jr, B Healy… - Proceedings of the …, 1999 - National Acad Sciences
We have determined complete gene sequences encoding the largest subunit of the RNA
polymerase II (RBP1) from two Microsporidia, Vairimorpha necatrix and Nosema locustae …