Article Commentary: Dealing with Diversity in Computational Cancer Modeling

D Johnson, S McKeever, G Stamatakos… - Cancer …, 2013 - journals.sagepub.com
This paper discusses the need for interconnecting computational cancer models from
different sources and scales within clinically relevant scenarios to increase the accuracy of …

A versatile platform for multilevel modeling of physiological systems: SBML-PHML hybrid modeling and simulation

Y Asai, T Abe, H Oka, M Okita, K Hagihara… - Advanced Biomedical …, 2014 - jstage.jst.go.jp
Specialized languages used for describing computational models in the field of systems
biology and physiology, such as Systems Biology Markup Language (SBML), CellML, and …

A method for visualizing CellML models

SM Wimalaratne, MDB Halstead, CM Lloyd… - …, 2009 - academic.oup.com
Abstract Motivation: The Physiome Project was established in 1997 to develop tools to
facilitate international collaboration in the physiological sciences and the sharing of …

A platform for in silico modeling of physiological systems III

Y Suzuki, Y Asai, H Oka, E Heien, T Urai… - … Conference of the …, 2009 - ieeexplore.ieee.org
Physiome and systems biology have been recognized as emerging and important research
areas that can integrate quantitatively growing knowledge about biological structure and …

Databases for multilevel biophysiology research available at Physiome. jp

Y Asai, T Abe, L Li, H Oka, T Nomura… - Frontiers in Physiology, 2015 - frontiersin.org
Physiome. jp (http://physiome. jp) is a portal site inaugurated in 2007 to support model-
based research in physiome and systems biology. At Physiome. jp, several tools and …

4D human body posture estimation based on a motion capture system and a multi-rigid link model

N Yoshikawa, Y Suzuki, W Ozaki… - … Conference of the …, 2012 - ieeexplore.ieee.org
Human motion analysis in various fields such as neurophysiology, clinical medicine, and
sports sciences utilizes a multi-rigid link model of a human body for considering kinetics by …

A versatile platform for multilevel modeling of physiological systems: template/instance framework for large-scale modeling and simulation

Y Asai, T Abe, H Oka, M Okita… - 2013 35th Annual …, 2013 - ieeexplore.ieee.org
Building multilevel models of physiological systems is a significant and effective method for
integrating a huge amount of bio-physiological data and knowledge obtained by earlier …

Optimization techniques for parallel biophysical simulations generated by insilicoIDE

EM Heien, Y Asai, T Nomura, K Hagihara - IPSJ Online Transactions, 2009 - jstage.jst.go.jp
Recent work in biophysical science increasingly focuses on modeling and simulating human
biophysical systems to better understand the human physiome. One program to generate …

[BOOK][B] Harnessing Biological Complexity: An Introduction to Computational Physiology

T Nomura, Y Asai - 2010 - books.google.com
The challenge for the biosciences in the twenty-first century is to integrate genome
sequencing information into a better understanding of biology, physiology, and human …

A First Course in “In Silico Medicine”

M Tanaka - Springer
The completion of human genome sequencing was an epoch-making event in reductionism
biosciences, liberating a vast amount of experimental data and allowing us to relate specific …