Stem cell systems and regeneration in planaria

JC Rink - Development genes and evolution, 2013 - Springer
Planarians are members of the Platyhelminthes (flatworms). These animals have evolved a
remarkable stem cell system. A single pluripotent adult stem cell type (“neoblast”) gives rise …

Beyond casual resemblance: rigorous frameworks for comparing regeneration across species

M Srivastava - Annual Review of Cell and Developmental …, 2021 - annualreviews.org
The majority of animal phyla have species that can regenerate. Comparing regeneration
across animals can reconstruct the molecular and cellular evolutionary history of this …

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

M Plass, J Solana, FA Wolf, S Ayoub, A Misios… - Science, 2018 - science.org
INTRODUCTION Understanding the differentiation of stem cells into the vast amount of cell
types that form the human body is a central problem of basic and medical science. The …

Widespread intron retention in mammals functionally tunes transcriptomes

U Braunschweig, NL Barbosa-Morais, Q Pan… - Genome …, 2014 - genome.cshlp.org
Alternative splicing (AS) of precursor RNAs is responsible for greatly expanding the
regulatory and functional capacity of eukaryotic genomes. Of the different classes of AS …

Alternative splicing landscapes in Arabidopsis thaliana across tissues and stress conditions highlight major functional differences with animals

G Martín, Y Márquez, F Mantica, P Duque, M Irimia - Genome biology, 2021 - Springer
Background Alternative splicing (AS) is a widespread regulatory mechanism in multicellular
organisms. Numerous transcriptomic and single-gene studies in plants have investigated AS …

Amphioxus functional genomics and the origins of vertebrate gene regulation

F Marlétaz, PN Firbas, I Maeso, JJ Tena, O Bogdanovic… - Nature, 2018 - nature.com
Vertebrates have greatly elaborated the basic chordate body plan and evolved highly
distinctive genomes that have been sculpted by two whole-genome duplications. Here we …

A highly conserved program of neuronal microexons is misregulated in autistic brains

M Irimia, RJ Weatheritt, JD Ellis, NN Parikshak… - Cell, 2014 - cell.com
Alternative splicing (AS) generates vast transcriptomic and proteomic complexity. However,
which of the myriad of detected AS events provide important biological functions is not well …

Single-cell analysis reveals functionally distinct classes within the planarian stem cell compartment

JC Van Wolfswinkel, DE Wagner, PW Reddien - Cell stem cell, 2014 - cell.com
Planarians are flatworms capable of regenerating any missing body region. This capacity is
mediated by neoblasts, a proliferative cell population that contains pluripotent stem cells …

MBNL proteins repress ES-cell-specific alternative splicing and reprogramming

H Han, M Irimia, PJ Ross, HK Sung, B Alipanahi… - Nature, 2013 - nature.com
Previous investigations of the core gene regulatory circuitry that controls the pluripotency of
embryonic stem (ES) cells have largely focused on the roles of transcription, chromatin and …

RNA interference by feeding in vitro–synthesized double‐stranded RNA to planarians: Methodology and dynamics

L Rouhana, JA Weiss, DJ Forsthoefel… - Developmental …, 2013 - Wiley Online Library
Background The ability to assess gene function is essential for understanding biological
processes. Currently, RNA interference (RNAi) is the only technique available to assess …