current concepts in inflammatory skin diseases evolved by transcriptome analysis: In-depth analysis of atopic dermatitis and psoriasis

J Schwingen, M Kaplan, FC Kurschus - International journal of molecular …, 2020 - mdpi.com
During the last decades, high-throughput assessment of gene expression in patient tissues
using microarray technology or RNA-Seq took center stage in clinical research. Insights into …

Multitissue multiomics systems biology to dissect complex diseases

X Yang - Trends in molecular medicine, 2020 - cell.com
Most complex diseases involve genetic and environmental risk factors, engage multiple cells
and tissues, and follow a polygenic or omnigenic model depicting numerous genes …

Mergeomics 2.0: a web server for multi-omics data integration to elucidate disease networks and predict therapeutics

J Ding, M Blencowe, T Nghiem, S Ha… - Nucleic Acids …, 2021 - academic.oup.com
The Mergeomics web server is a flexible online tool for multi-omics data integration to derive
biological pathways, networks, and key drivers important to disease pathogenesis and is …

Network modeling of single-cell omics data: challenges, opportunities, and progresses

M Blencowe, D Arneson, J Ding… - Emerging topics in …, 2019 - portlandpress.com
Single-cell multi-omics technologies are rapidly evolving, prompting both methodological
advances and biological discoveries at an unprecedented speed. Gene regulatory network …

The Brain–skin connection and the pathogenesis of psoriasis: a review with a focus on the serotonergic system

AM Martins, A Ascenso, HM Ribeiro, J Marto - Cells, 2020 - mdpi.com
Psoriasis is a common non-communicable chronic immune-mediated skin disease, affecting
approximately 125 million people in the world. Its pathogenesis results from a combination …

Environmental temperature and human epigenetic modifications: A systematic review

R Xu, S Li, S Guo, Q Zhao, MJ Abramson, S Li… - Environmental …, 2020 - Elsevier
The knowledge about the effects of environmental temperature on human epigenome is a
potential key to understand the health impacts of temperature and to guide acclimation …

Multi-Omics research strategies for psoriasis and atopic dermatitis

Y Guo, L Luo, J Zhu, C Li - International Journal of Molecular Sciences, 2023 - mdpi.com
Psoriasis and atopic dermatitis (AD) are multifactorial and heterogeneous inflammatory skin
diseases, while years of research have yielded no cure, and the costs associated with caring …

Disentangling the complexity of psoriasis in the post-genome-wide association era

C Antonatos, K Grafanaki, S Georgiou, E Evangelou… - Genes & …, 2023 - nature.com
In recent years, genome-wide association studies (GWAS) have been instrumental in
unraveling the genetic architecture of complex diseases, including psoriasis. The application …

Network modeling approaches and applications to unravelling non-alcoholic fatty liver disease

M Blencowe, T Karunanayake, J Wier, N Hsu, X Yang - Genes, 2019 - mdpi.com
Non-alcoholic fatty liver disease (NAFLD) is a progressive condition of the liver
encompassing a range of pathologies including steatosis, non-alcoholic steatohepatitis …

Shared and distinct pathways and networks genetically linked to coronary artery disease between human and mouse

Z Kurt, J Cheng, R Barrere-Cain, CN McQuillen… - Elife, 2023 - elifesciences.org
Mouse models have been used extensively to study human coronary artery disease (CAD)
or atherosclerosis and to test therapeutic targets. However, whether mouse and human …