RNA secondary structures have proven essential for understanding the regulatory functions
performed by RNA such as microRNAs, bacterial small RNAs, or riboswitches. This success …

RNA biology has risen to prominence after a remarkable discovery of diverse functions of
noncoding RNA (ncRNA). Most untranslated transcripts often exert their regulatory functions …

Effective embedding is actively conducted by applying deep learning to biomolecular
information. Obtaining better embeddings enhances the quality of downstream analyses …

Making no use of physical laws or co-evolutionary information, de novo deep learning (DL)
models for RNA secondary structure prediction have achieved far superior performances …

Structured elements of RNA molecules are essential in, eg, RNA stabilization, localization,
and protein interaction, and their conservation across species suggests a common …

Gemin5 is a predominantly cytoplasmic protein that downregulates translation, beyond
controlling snRNPs assembly. The C-terminal region harbors a non-canonical RNA-binding …

Malignant neoplasms are characterized by high molecular heterogeneity due to multilevel
deregulation of gene expression and cellular functions. It is known that non-coding RNAs …

Motivation RNA threading aims to identify remote homologies for template-based modeling
of RNA 3D structure. Existing RNA alignment methods primarily rely on secondary structure …

RNA secondary structures play essential roles in the formation of the tertiary structure and
function of a transcript. Recent genome-wide studies highlight significant potential for RNA …

Background Improving the prediction of structures, especially those containing pseudoknots
(structures with crossing base pairs) is an ongoing challenge. Homology-based methods …