Deep reticulation: the long legacy of hybridization in vascular plant evolution

GW Stull, KK Pham, PS Soltis, DE Soltis - The Plant Journal, 2023 - Wiley Online Library
Hybridization has long been recognized as a fundamental evolutionary process in plants
but, until recently, our understanding of its phylogenetic distribution and biological …

An updated infrageneric classification of the oaks: review of previous taxonomic schemes and synthesis of evolutionary patterns

T Denk, GW Grimm, PS Manos, M Deng… - … ecology. Exploring the …, 2017 - Springer
In this chapter, we review major classification schemes proposed for oaks by John Claudius
Loudon, Anders Sandøe Ørsted, William Trelease, Otto Karl Anton Schwarz, Aimée …

Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

BF Zhou, S Yuan, AA Crowl, YY Liang, Y Shi… - Nature …, 2022 - nature.com
Northern Hemisphere forests changed drastically in the early Eocene with the diversification
of the oak family (Fagaceae). Cooling climates over the next 20 million years fostered the …

Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture

YY Yang, XJ Qu, R Zhang, GW Stull, TS Yi - Molecular Phylogenetics and …, 2021 - Elsevier
Plastid phylogenomic analyses have shed light on many recalcitrant relationships across the
angiosperm Tree of Life and continue to play an important role in plant phylogenetics …

Phylogenomics reveals extreme gene tree discordance in a lineage of dominant trees: hybridization, introgression, and incomplete lineage sorting blur deep …

TGB McLay, RM Fowler, PS Fahey, DJ Murphy… - Molecular Phylogenetics …, 2023 - Elsevier
Eucalypts are a large and ecologically important group of plants on the Australian continent,
and understanding their evolution is important in understanding evolution of the unique …

East Asian origins of European holly oaks (Quercus section Ilex Loudon) via the Tibet‐Himalaya

XL Jiang, AL Hipp, M Deng, T Su… - Journal of …, 2019 - Wiley Online Library
Aim Many subtropical organisms exhibit an East Asian‐Tethyan disjunction, a distribution
split between East Asia and the Mediterranean. The underlying mechanisms and timing …

A chromosome-level genome assembly of the Chinese cork oak (Quercus variabilis)

B Han, L Wang, Y **an, XM **e, WQ Li… - Frontiers in Plant …, 2022 - frontiersin.org
Quercus variabilis (Fagaceae) is an ecologically and economically important deciduous
broadleaved tree species native to and widespread in East Asia. It is a valuable woody …

Development of Chloroplast and Nuclear DNA Markers for Chinese Oaks (Quercus Subgenus Quercus) and Assessment of Their Utility as DNA Barcodes

J Yang, L Vázquez, X Chen, H Li, H Zhang… - Frontiers in Plant …, 2017 - frontiersin.org
Chloroplast DNA (cpDNA) is frequently used for species demography, evolution, and
species discrimination of plants. However, the lack of efficient and universal markers often …

Gaussian blue noise

AGM Ahmed, J Ren, P Wonka - ACM Transactions on Graphics (TOG), 2022 - dl.acm.org
Among the various approaches for producing point distributions with blue noise spectrum,
we argue for an optimization framework using Gaussian kernels. We show that with a wise …

Introgression and incomplete lineage sorting blurred phylogenetic relationships across the genomes of sclerophyllous oaks from southwest China

XG Ma, YB Ren, H Sun - Cladistics, 2024 - Wiley Online Library
Resolving evolutionary relationships among closely related species with interspecific gene
flow is challenging. Genome‐scale data provide opportunities to clarify complex …