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A tutorial review: Metabolomics and partial least squares-discriminant analysis–a marriage of convenience or a shotgun wedding
The predominance of partial least squares-discriminant analysis (PLS-DA) used to analyze
metabolomics datasets (indeed, it is the most well-known tool to perform classification and …
metabolomics datasets (indeed, it is the most well-known tool to perform classification and …
Missing heritability and strategies for finding the underlying causes of complex disease
Although recent genome-wide studies have provided valuable insights into the genetic basis
of human disease, they have explained relatively little of the heritability of most complex …
of human disease, they have explained relatively little of the heritability of most complex …
[HTML][HTML] Genome-wide modeling of polygenic risk score in colorectal cancer risk
Accurate colorectal cancer (CRC) risk prediction models are critical for identifying
individuals at low and high risk of develo** CRC, as they can then be offered targeted …
individuals at low and high risk of develo** CRC, as they can then be offered targeted …
Random forest for bioinformatics
Y Qi - Ensemble machine learning: Methods and applications, 2012 - Springer
Modern biology has experienced an increased use of machine learning techniques for large
scale and complex biological data analysis. In the area of Bioinformatics, the Random Forest …
scale and complex biological data analysis. In the area of Bioinformatics, the Random Forest …
Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?
Abstract In the Life Sciences 'omics' data is increasingly generated by different high-
throughput technologies. Often only the integration of these data allows uncovering …
throughput technologies. Often only the integration of these data allows uncovering …
Machine learning for big data analytics in plants
Rapid advances in high-throughput genomic technology have enabled biology to enter the
era of 'Big Data'(large datasets). The plant science community not only needs to build its …
era of 'Big Data'(large datasets). The plant science community not only needs to build its …
Bat biology, genomes, and the Bat1K project: to generate chromosome-level genomes for all living bat species
Bats are unique among mammals, possessing some of the rarest mammalian adaptations,
including true self-powered flight, laryngeal echolocation, exceptional longevity, unique …
including true self-powered flight, laryngeal echolocation, exceptional longevity, unique …
Molecular pathological epidemiology of colorectal neoplasia: an emerging transdisciplinary and interdisciplinary field
Colorectal cancer is a complex disease resulting from somatic genetic and epigenetic
alterations, including locus-specific CpG island methylation and global DNA or LINE-1 …
alterations, including locus-specific CpG island methylation and global DNA or LINE-1 …
What makes a good prediction? Feature importance and beginning to open the black box of machine learning in genetics
AM Musolf, ER Holzinger, JD Malley, JE Bailey-Wilson - Human Genetics, 2022 - Springer
Genetic data have become increasingly complex within the past decade, leading
researchers to pursue increasingly complex questions, such as those involving epistatic …
researchers to pursue increasingly complex questions, such as those involving epistatic …
Bioinformatics challenges for personalized medicine
Motivation: Widespread availability of low-cost, full genome sequencing will introduce new
challenges for bioinformatics. Results: This review outlines recent developments in …
challenges for bioinformatics. Results: This review outlines recent developments in …