[HTML][HTML] 25 years of serving the community with ribosomal RNA gene reference databases and tools
SILVA (lat. forest) is a comprehensive web resource, providing services around up to date,
high-quality datasets of aligned ribosomal RNA gene (rDNA) sequences from the Bacteria …
high-quality datasets of aligned ribosomal RNA gene (rDNA) sequences from the Bacteria …
[HTML][HTML] Akkermansia muciniphila in the human gastrointestinal tract: when, where, and how?
Akkermansia muciniphila is a mucin-degrading bacterium of the phylum Verrucomicrobia. Its
abundance in the human intestinal tract is inversely correlated to several disease states. A …
abundance in the human intestinal tract is inversely correlated to several disease states. A …
Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major …
The class Deltaproteobacteria comprises an ecologically and metabolically diverse group of
bacteria best known for dissimilatory sulphate reduction and predatory behaviour. Although …
bacteria best known for dissimilatory sulphate reduction and predatory behaviour. Although …
Non-syntrophic methanogenic hydrocarbon degradation by an archaeal species
The methanogenic degradation of oil hydrocarbons can proceed through syntrophic
partnerships of hydrocarbon-degrading bacteria and methanogenic archaea,–. However …
partnerships of hydrocarbon-degrading bacteria and methanogenic archaea,–. However …
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing
Microorganisms play crucial roles in water recycling, pollution removal and resource
recovery in the wastewater industry. The structure of these microbial communities is …
recovery in the wastewater industry. The structure of these microbial communities is …
Precision microbiome modulation with discrete dietary fiber structures directs short-chain fatty acid production
Dietary fibers (DFs) impact the gut microbiome in ways often considered beneficial.
However, it is unknown if precise and predictable manipulations of the gut microbiota, and …
However, it is unknown if precise and predictable manipulations of the gut microbiota, and …
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Taxonomy is an organizing principle of biology and is ideally based on evolutionary
relationships among organisms. Development of a robust bacterial taxonomy has been …
relationships among organisms. Development of a robust bacterial taxonomy has been …
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently
available microbial genomes. This is being addressed by advances in sequencing …
available microbial genomes. This is being addressed by advances in sequencing …
[LIBRO][B] Environmental DNA: For biodiversity research and monitoring
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
Bacterial chemolithoautotrophy via manganese oxidation
Manganese is one of the most abundant elements on Earth. The oxidation of manganese
has long been theorized—yet has not been demonstrated,–—to fuel the growth of …
has long been theorized—yet has not been demonstrated,–—to fuel the growth of …