[HTML][HTML] Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization

F Hu, AA Chen, H Horng, V Bashyam, C Davatzikos… - NeuroImage, 2023 - Elsevier
Magnetic resonance imaging and computed tomography from multiple batches (eg sites,
scanners, datasets, etc.) are increasingly used alongside complex downstream analyses to …

[HTML][HTML] Open and reproducible neuroimaging: from study inception to publication

G Niso, R Botvinik-Nezer, S Appelhoff, A De La Vega… - NeuroImage, 2022 - Elsevier
Empirical observations of how labs conduct research indicate that the adoption rate of open
practices for transparent, reproducible, and collaborative science remains in its infancy. This …

[HTML][HTML] Brain charts for the human lifespan

RAI Bethlehem, J Seidlitz, SR White, JW Vogel… - Nature, 2022 - nature.com
Over the past few decades, neuroimaging has become a ubiquitous tool in basic research
and clinical studies of the human brain. However, no reference standards currently exist to …

Neuromaps: structural and functional interpretation of brain maps

RD Markello, JY Hansen, ZQ Liu, V Bazinet, G Shafiei… - Nature …, 2022 - nature.com
Imaging technologies are increasingly used to generate high-resolution reference maps of
brain structure and function. Comparing experimentally generated maps to these reference …

Reproducibility in neuroimaging analysis: challenges and solutions

R Botvinik-Nezer, TD Wager - Biological Psychiatry: Cognitive …, 2023 - Elsevier
Recent years have marked a renaissance in efforts to increase research reproducibility in
psychology, neuroscience, and related fields. Reproducibility is the cornerstone of a solid …

Choice of Voxel-based Morphometry processing pipeline drives variability in the location of neuroanatomical brain markers

X Zhou, R Wu, Y Zeng, Z Qi, S Ferraro, L Xu… - Communications …, 2022 - nature.com
Fundamental and clinical neuroscience has benefited tremendously from the development
of automated computational analyses. In excess of 600 human neuroimaging papers using …

Data management strategy for a collaborative research center

D Mittal, R Mease, T Kuner, H Flor, R Kuner… - GigaScience, 2023 - academic.oup.com
The importance of effective research data management (RDM) strategies to support the
generation of Findable, Accessible, Interoperable, and Reusable (FAIR) neuroscience data …

XCP-D: A Robust Pipeline for the post-processing of fMRI data

K Mehta, T Salo, TJ Madison, A Adebimpe… - Imaging …, 2024 - direct.mit.edu
Functional neuroimaging is an essential tool for neuroscience research. Pre-processing
pipelines produce standardized, minimally pre-processed data to support a range of …

Age‐related change in task‐evoked amygdala—prefrontal circuitry: A multiverse approach with an accelerated longitudinal cohort aged 4–22 years

PA Bloom, M VanTieghem… - Human Brain …, 2022 - Wiley Online Library
The amygdala and its connections with medial prefrontal cortex (mPFC) play central roles in
the development of emotional processes. While several studies have suggested that this …

[HTML][HTML] Benchmarking common preprocessing strategies in early childhood functional connectivity and intersubject correlation fMRI

K Graff, R Tansey, A Ip, C Rohr, D Dimond… - Developmental …, 2022 - Elsevier
Preprocessing choices present a particular challenge for researchers working with
functional magnetic resonance imaging (fMRI) data from young children. Steps which have …