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The supermatrix approach to systematics
Recent reviews of the construction of large phylogenies have focused on supertree methods
that involve separate analyses of data sets and subsequent integration of the resulting trees …
that involve separate analyses of data sets and subsequent integration of the resulting trees …
The enigmatic roles of Anelloviridae and Redondoviridae in humans
Anelloviridae and Redondoviridae are virus families with small, circular, single-stranded
DNA genomes that are common components of the human virome. Despite their small …
DNA genomes that are common components of the human virome. Despite their small …
Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria
Actinobacteria of the acI lineage are the most abundant microbes in freshwater systems, but
there are so far no pure living cultures of these organisms, possibly because of metabolic …
there are so far no pure living cultures of these organisms, possibly because of metabolic …
Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments
Background Analysis of mixed microbial communities using metagenomic sequencing
experiments requires multiple preprocessing and analytical steps to interpret the microbial …
experiments requires multiple preprocessing and analytical steps to interpret the microbial …
Revised road map to the phylum Firmicutes
Starting with the Second Edition of Bergey's Manual of Systematic Bacteriology, the
arrangement of content follows a phylogenetic framework or “road map” based largely on …
arrangement of content follows a phylogenetic framework or “road map” based largely on …
Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi
Background Representatives of the phylum Chloroflexi, though reportedly highly abundant
in the extensive deep water habitats of both marine (SAR202 up to 30% of total prokaryotes) …
in the extensive deep water habitats of both marine (SAR202 up to 30% of total prokaryotes) …
Road map of the phylum Actinobacteria
W Ludwig, J Euzéby, P Schumann, HJ Busse… - Bergey's manual® of …, 2012 - Springer
This revised road map and the resulting taxonomic outline update the previous versions of
Garrity and Holt (2001) and Garrity et al.(2005) with the description of additional taxa and …
Garrity and Holt (2001) and Garrity et al.(2005) with the description of additional taxa and …
Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves'(LD12)
Alphaproteobacteria are common members of marine bacterioplankton assemblages, but
are believed to be rare in lacustrine systems. However, uncultured Alphaproteobacteria of …
are believed to be rare in lacustrine systems. However, uncultured Alphaproteobacteria of …
Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR
Background The increased use of metagenomics and single-cell genomics led to the
discovery of organisms from phyla with no cultivated representatives and proposed new …
discovery of organisms from phyla with no cultivated representatives and proposed new …
A reconsideration of the classification of the spider infraorder Mygalomorphae (Arachnida: Araneae) based on three nuclear genes and morphology
Background The infraorder Mygalomorphae (ie, trapdoor spiders, tarantulas, funnel web
spiders, etc.) is one of three main lineages of spiders. Comprising 15 families, 325 genera …
spiders, etc.) is one of three main lineages of spiders. Comprising 15 families, 325 genera …