Demystifying graph databases: Analysis and taxonomy of data organization, system designs, and graph queries

M Besta, R Gerstenberger, E Peter, M Fischer… - ACM Computing …, 2023 - dl.acm.org
Numerous irregular graph datasets, for example social networks or web graphs, may contain
even trillions of edges. Often, their structure changes over time and they have domain …

An overview of graph databases and their applications in the biomedical domain

S Timón-Reina, M Rincón, R Martínez-Tomás - Database, 2021 - academic.oup.com
Over the past couple of decades, the explosion of densely interconnected data has
stimulated the research, development and adoption of graph database technologies. From …

Sebs: A serverless benchmark suite for function-as-a-service computing

M Copik, G Kwasniewski, M Besta… - Proceedings of the …, 2021 - dl.acm.org
Function-as-a-Service (FaaS) is one of the most promising directions for the future of cloud
services, and serverless functions have immediately become a new middleware for building …

Sisa: Set-centric instruction set architecture for graph mining on processing-in-memory systems

M Besta, R Kanakagiri, G Kwasniewski… - MICRO-54: 54th Annual …, 2021 - dl.acm.org
Simple graph algorithms such as PageRank have been the target of numerous hardware
accelerators. Yet, there also exist much more complex graph mining algorithms for problems …

Slim fly: A cost effective low-diameter network topology

M Besta, T Hoefler - SC'14: proceedings of the international …, 2014 - ieeexplore.ieee.org
We introduce a high-performance cost-effective network topology called Slim Fly that
approaches the theoretically optimal network diameter. Slim Fly is based on graphs that …

Parallel and distributed graph neural networks: An in-depth concurrency analysis

M Besta, T Hoefler - IEEE Transactions on Pattern Analysis and …, 2024 - ieeexplore.ieee.org
Graph neural networks (GNNs) are among the most powerful tools in deep learning. They
routinely solve complex problems on unstructured networks, such as node classification …

Communication-efficient jaccard similarity for high-performance distributed genome comparisons

M Besta, R Kanakagiri, H Mustafa… - 2020 IEEE …, 2020 - ieeexplore.ieee.org
The Jaccard similarity index is an important measure of the overlap of two sets, widely used
in machine learning, computational genomics, information retrieval, and many other areas …

Neural graph databases

M Besta, P Iff, F Scheidl, K Osawa… - Learning on Graphs …, 2022 - proceedings.mlr.press
Graph databases (GDBs) enable processing and analysis of unstructured, complex, rich,
and usually vast graph datasets. Despite the large significance of GDBs in both academia …

Motif prediction with graph neural networks

M Besta, R Grob, C Miglioli, N Bernold… - Proceedings of the 28th …, 2022 - dl.acm.org
Link prediction is one of the central problems in graph mining. However, recent studies
highlight the importance of higher-order network analysis, where complex structures called …

The graph database interface: Scaling online transactional and analytical graph workloads to hundreds of thousands of cores

M Besta, R Gerstenberger, M Fischer… - Proceedings of the …, 2023 - dl.acm.org
Graph databases (GDBs) are crucial in academic and industry applications. The key
challenges in develo** GDBs are achieving high performance, scalability …