[HTML][HTML] Differences in alternative splicing and their potential underlying factors between animals and plants

Y Du, L Cao, S Wang, L Guo, L Tan, H Liu… - Journal of Advanced …, 2024 - Elsevier
Background Alternative splicing (AS), a posttranscriptional process, contributes to the
complexity of transcripts from a limited number of genes in a genome, and AS is considered …

Triplet photosensitization mechanism of thymine by an oxidized nucleobase: from a dimeric model to DNA environment

A Francés-Monerris, C Hognon, MA Miranda… - Physical Chemistry …, 2018 - pubs.rsc.org
Nucleic acids are constantly exposed to external agents that can induce chemical and
photochemical damage. In spite of the great advances achieved in the last years, some …

Impact of the Nucleosome histone core on the structure and dynamics of DNA-containing pyrimidine–pyrimidone (6–4) photoproduct

E Matouskova, E Bignon, VEP Claerbout… - Journal of Chemical …, 2020 - ACS Publications
The pyrimidine–pyrimidone (6–4) photoproduct (64-PP) is an important photoinduced DNA
lesion constituting a mutational signature for melanoma. The structural impact of 64-PP on …

[HTML][HTML] Accurate estimation of the standard binding free energy of netropsin with DNA

H Zhang, H Gattuso, E Dumont, W Cai, A Monari… - Molecules, 2018 - mdpi.com
DNA is the target of chemical compounds (drugs, pollutants, photosensitizers, etc.), which
bind through non-covalent interactions. Depending on their structure and their chemical …

Increased risk of acute pancreatitis occurrence in smokers with rs5751901 polymorphisms in GGT1 gene

M Ściskalska, M Ołdakowska, G Marek… - … journal of medical …, 2020 - pmc.ncbi.nlm.nih.gov
Objectives: The study was aimed to assess γ‑glutamyltransferase (GGT) activity and
concentration as a marker of oxidative stress induced by exposure to tobacco smoke in …

Impact of DNA sequences on DNA 'opening'by the Rad4/XPC nucleotide excision repair complex

D Paul, H Mu, A Tavakoli, Q Dai, S Chakraborty, C He… - DNA repair, 2021 - Elsevier
Rad4/XPC recognizes diverse DNA lesions to initiate nucleotide excision repair (NER).
However, NER propensities among lesions vary widely and repair-resistant lesions are …

Overstretching of B-DNA with various pulling protocols: Appearance of structural polymorphism and S-DNA

A Garai, S Mogurampelly, S Bag… - The Journal of chemical …, 2017 - pubs.aip.org
We report a structural polymorphism of the S-DNA when a canonical B-DNA is stretched
under different pulling protocols and provide a fundamental molecular understanding of the …

Cooperative effects of cytosine methylation on DNA structure and dynamics

C Hognon, V Besancenot, A Gruez… - The Journal of …, 2019 - ACS Publications
The behavior of the structural parameters of DNA considering different levels of methylation
in CpG islands is studied by means of full-atom molecular dynamics simulations and …

DNA photolyase from Antarctic marine bacterium Rhodococcus sp. NJ-530 can repair DNA damage caused by ultraviolet

Y He, C Qu, L Zhang, J Miao - 3 Biotech, 2021 - Springer
Marine bacterium Rhodococcus sp. NJ-530 has developed several ultraviolet (UV) adaptive
characteristics for survival and growth in extreme Antarctic environment. Rhodococcus sp …