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A practical guide to amplicon and metagenomic analysis of microbiome data
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …
field of microbiome research, and massive microbiome datasets are now being generated …
The best practice for microbiome analysis using R
With the gradual maturity of sequencing technology, many microbiome studies have
published, driving the emergence and advance of related analysis tools. R language is the …
published, driving the emergence and advance of related analysis tools. R language is the …
Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota
K Hosomi, M Saito, J Park, H Murakami… - Nature …, 2022 - nature.com
The gut microbiome is an important determinant in various diseases. Here we perform a
cross-sectional study of Japanese adults and identify the Blautia genus, especially B …
cross-sectional study of Japanese adults and identify the Blautia genus, especially B …
Dynamic root microbiome sustains soybean productivity under unbalanced fertilization
M Wang, AH Ge, X Ma, X Wang, Q **e, L Wang… - Nature …, 2024 - nature.com
Root-associated microbiomes contribute to plant growth and health, and are dynamically
affected by plant development and changes in the soil environment. However, how different …
affected by plant development and changes in the soil environment. However, how different …
Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease
For decades, variability in clinical efficacy of the widely used inflammatory bowel disease
(IBD) drug 5-aminosalicylic acid (5-ASA) has been attributed, in part, to its acetylation and …
(IBD) drug 5-aminosalicylic acid (5-ASA) has been attributed, in part, to its acetylation and …
[HTML][HTML] Fungal mycobiome drives IL-33 secretion and type 2 immunity in pancreatic cancer
TH 2 cells and innate lymphoid cells 2 (ILC2) can stimulate tumor growth by secreting pro-
tumorigenic cytokines such as interleukin-4 (IL-4), IL-5, and IL-13. However, the …
tumorigenic cytokines such as interleukin-4 (IL-4), IL-5, and IL-13. However, the …
Host selection shapes crop microbiome assembly and network complexity
Plant microbiomes are essential to host health and productivity but the ecological processes
that govern crop microbiome assembly are not fully known. Here we examined bacterial …
that govern crop microbiome assembly are not fully known. Here we examined bacterial …
Specialized metabolic functions of keystone taxa sustain soil microbiome stability
Background The relationship between biodiversity and soil microbiome stability remains
poorly understood. Here, we investigated the impacts of bacterial phylogenetic diversity on …
poorly understood. Here, we investigated the impacts of bacterial phylogenetic diversity on …
Structure and function of the soil microbiome underlying N2O emissions from global wetlands
Wetland soils are the greatest source of nitrous oxide (N2O), a critical greenhouse gas and
ozone depleter released by microbes. Yet, microbial players and processes underlying the …
ozone depleter released by microbes. Yet, microbial players and processes underlying the …
Plant developmental stage drives the differentiation in ecological role of the maize microbiome
Background Plants live with diverse microbial communities which profoundly affect multiple
facets of host performance, but if and how host development impacts the assembly, functions …
facets of host performance, but if and how host development impacts the assembly, functions …