Machine learning methods for small data challenges in molecular science

B Dou, Z Zhu, E Merkurjev, L Ke, L Chen… - Chemical …, 2023 - ACS Publications
Small data are often used in scientific and engineering research due to the presence of
various constraints, such as time, cost, ethics, privacy, security, and technical limitations in …

A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

Accurate prediction of molecular properties and drug targets using a self-supervised image representation learning framework

X Zeng, H ** molecules with text for generative pre-training
Z Liu, W Zhang, Y **a, L Wu, S **e, T Qin… - arxiv preprint arxiv …, 2023 - arxiv.org
Generative pre-trained Transformer (GPT) has demonstrates its great success in natural
language processing and related techniques have been adapted into molecular modeling …

Improving molecular contrastive learning via faulty negative mitigation and decomposed fragment contrast

Y Wang, R Magar, C Liang… - Journal of Chemical …, 2022 - ACS Publications
Deep learning has been a prevalence in computational chemistry and widely implemented
in molecular property predictions. Recently, self-supervised learning (SSL), especially …